Jatropha Genome Database

JcCB0005881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005881.10 - phase: 0 
         (429 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g080670.1 Dihydroorotate dehydrogenase 1; Dihydroorot...   746   0.0  
IMGA|Medtr1g143810.1 Dihydroorotate dehydrogenase 2 chr01_pseudo...    50   2e-06

>IMGA|Medtr6g080670.1 Dihydroorotate dehydrogenase 1; Dihydroorotate
           oxidase chr06_pseudomolecule_IMGAG_V3 16211036-16217708
           F EGN_Mt090430 20090702
          Length = 424

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/429 (83%), Positives = 386/429 (89%), Gaps = 5/429 (1%)

Query: 1   MASLSFTQIRGRHSLAEFAAVRTRQTSLTNQRLRNRIGSLRVVADAGAKGEPDLSVTVNG 60
           MA+LS TQ++ R+S + F+   +++      R+       +V A  G   EPDLSV VNG
Sbjct: 1   MANLSMTQLKTRNSASRFSFNFSKKVYPRPSRV-----DFKVFASEGQVSEPDLSVKVNG 55

Query: 61  LQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLRAGANG 120
           L MPNPFVIGSGPPGTNYTVMKRAFDEGWG VIAKTVSLDA+KVINVTPRYARLRA ANG
Sbjct: 56  LHMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAAKVINVTPRYARLRANANG 115

Query: 121 SAKGQIIGWENIELISDRPLETMLSEFKRLKEEYPERILIASIMEEYDKAAWEELIDRVE 180
           SAKG+IIGW+NIELISDRPLETML EFK+LKEEYP+RILIASIMEEY+KAAWEELIDRVE
Sbjct: 116 SAKGEIIGWQNIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVE 175

Query: 181 QTGIDAIEVNFSCPHGMPERKMGAAVGQDCVLLEEVCGWVNAKATVPVWAKMTPNITDIT 240
           QTGIDAIE+NFSCPHGMPERKMGAAVGQDC LLEEVCGW+NAKATVPVWAKMTPNITDI+
Sbjct: 176 QTGIDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDIS 235

Query: 241 QPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKVM 300
           QPARVALSSGCEGVAAINTIMSVMGINL TLRPEPCVEGYSTPGGYS+KAVHPIALGKVM
Sbjct: 236 QPARVALSSGCEGVAAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSAKAVHPIALGKVM 295

Query: 301 NIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQVCTGVMMHGYGLVKKLCEE 360
           +IAKMMKSEF+ E YSLS IGGVETG DAAEFILLGA+TVQVCTGVMMHGYGLVKKL  E
Sbjct: 296 SIAKMMKSEFDSENYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLSLE 355

Query: 361 LKDFMKMHNFSSIEDFRGASLDYFTTHTDLVRRQKEAIELRKAVKKGLQSDKDWTGDGFV 420
           LKDFMK HNF+SIEDFRGASL YFTTHTDLV RQ+EAI+ RKA+KKGLQSDKDWTGDGFV
Sbjct: 356 LKDFMKKHNFTSIEDFRGASLQYFTTHTDLVHRQQEAIKQRKAIKKGLQSDKDWTGDGFV 415

Query: 421 KETESMVSN 429
           KE+ESMVSN
Sbjct: 416 KESESMVSN 424


>IMGA|Medtr1g143810.1 Dihydroorotate dehydrogenase 2
           chr01_pseudomolecule_IMGAG_V3 31856373-31862335 E
           EGN_Mt090430 20090702
          Length = 455

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 227 PVWAKMTPNIT--DITQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEG--YST 282
           P+  K+ P+++  D+   A VAL+   +G+   NT +S         RP+P       S 
Sbjct: 310 PLLVKIAPDLSKEDLEDIAAVALALHLDGLIISNTTIS---------RPDPVKNNPLASE 360

Query: 283 PGGYSSKAVHPIALGKVMNIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQV 342
            GG S K +  ++     NI K M       +  L G GG+ +G DA + +  GA+ VQ+
Sbjct: 361 TGGLSGKPLFNLS----TNILKEMYI-LTRGRIPLIGCGGISSGEDAYQKVRAGATLVQL 415

Query: 343 CTGVMMHGYGLVKKLCEELKDFMKMHNFSSIEDFRGA 379
            T     G  L+ ++  EL   ++   F SI D  GA
Sbjct: 416 YTAFAYGGPALIPQIKAELAACLERDGFKSILDAVGA 452