Jatropha Genome Database

JcCB0005461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; Mu...   548   e-156

>IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; MutS
           1 protein chr01_pseudomolecule_IMGAG_V3
           13157439-13142729 E EGN_Mt090430 20090702
          Length = 1224

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 306/581 (52%), Positives = 355/581 (61%), Gaps = 129/581 (22%)

Query: 1   MYWLVA-RNVVFALPKWRSLTLFLRSPACKYSSFSRSPSLLIAIAGLEFNCMILVIKSRR 59
           MY L   RNVV   P +RSL+LF         +F   PS  I    L  N          
Sbjct: 1   MYKLATTRNVVVFFPCFRSLSLF--------RNFHSPPSSFIPSRFLRTN---------- 42

Query: 60  KDVERVCCLKEQKNLKGNARVTKKSKASNNVLDDKDLSHIIWWKE--------------- 104
             V+++ C K++K  +G+ +VTKK + S+NVLD+K+LSHI+WWKE               
Sbjct: 43  GRVQKISCFKDRKVSRGSGKVTKKLRVSDNVLDEKELSHILWWKEASRLNFFLCEHGYYF 102

Query: 105 -----------------------------RLQQCRKPSTIQLVKRLMYSNLLGLDVNLKN 135
                                         LQ C+KPST+ L++RL YSNLLGLD NLKN
Sbjct: 103 FYCFDHKPQNIYRKPCFFFLSCFLSKLWQELQTCKKPSTMNLIERLEYSNLLGLDSNLKN 162

Query: 136 GSLKEGNLNWEMLQFKSKFPREVLLCR--------------------------------- 162
           G+LK G LN ++LQFKS+FPR+VLLCR                                 
Sbjct: 163 GTLKAGTLNCDILQFKSQFPRQVLLCRETKLPFSTNFCLLFWLHTMIILELTFSWYLFIS 222

Query: 163 ---------VGDFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTR 213
                    VGDFYEA+GIDAC LVEYAGLNPFGGLRSDSIP+AGCPVVNLRQTLDDLTR
Sbjct: 223 PFLFKICSQVGDFYEALGIDACILVEYAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTR 282

Query: 214 NGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRS 273
           NGYSVCIVEEVQGP QARS+K RFISGHAHPGSPYV+GLVG DHD+DFPEPMPVVGIS S
Sbjct: 283 NGYSVCIVEEVQGPAQARSKKRRFISGHAHPGSPYVYGLVGADHDIDFPEPMPVVGISHS 342

Query: 274 ARGYCIVSVLEAMKTYSLEDGLTEEALVAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXX 333
           ARGYCI  V+E MKTYS ED LTEEA+V KLRTC+YHHLFLHTSLR NS GT +      
Sbjct: 343 ARGYCISMVVETMKTYSTEDCLTEEAVVTKLRTCQYHHLFLHTSLRRNSCGTSKWAEFGE 402

Query: 334 XXXXXXXCSTRHFEWFQGNPVTELLFKVRELYGLENGVAFRNVTVPSENRPHSLHLGTAT 393
                  CS+RH EWF GNPV++LL KV+ELYGL++ V FRNVTV S NR   L LGT+T
Sbjct: 403 GGLLWGECSSRHSEWFDGNPVSDLLVKVKELYGLDHEVLFRNVTVSSGNRAQPLTLGTST 462

Query: 394 QIGQFNFTXTVXIEFFMXCQPILXQVFHTLRCHTNRRNTLFIEGIASIKLLRYVRDLLLN 453
           QIG                 P L +V     C             + + +L YVRDLLLN
Sbjct: 463 QIGVIPTD----------GIPSLLKVLLPPHC-------------SGLPIL-YVRDLLLN 498

Query: 454 PPAYEIASTIQAICKLMSNVTCSIPEFTCVSSAKVVFYYFW 494
           PP+YEIAS IQA C+LMS+VTCSIPEFTCVSSAK+     W
Sbjct: 499 PPSYEIASKIQATCRLMSSVTCSIPEFTCVSSAKIAKLLEW 539