Jatropha Genome Database

JcCB0004891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.20 + phase: 0 
         (244 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g075080.1 Helix-loop-helix DNA-binding chr05_pseudomo...   154   4e-38
IMGA|Medtr5g033790.1 Helix-loop-helix DNA-binding chr05_pseudomo...    98   4e-21
IMGA|Medtr7g106450.1 Helix-loop-helix DNA-binding chr07_pseudomo...    84   5e-17
IMGA|Medtr3g094180.1 Helix-loop-helix DNA-binding chr03_pseudomo...    83   2e-16
IMGA|Medtr1g118050.1 Helix-loop-helix DNA-binding chr01_pseudomo...    81   5e-16
IMGA|Medtr5g033970.1 Putative bHLH131 transcription factor, chr0...    78   4e-15
IMGA|Medtr4g109590.1 Helix-loop-helix DNA-binding chr04_pseudomo...    67   7e-12
IMGA|Medtr4g128050.1 Helix-loop-helix DNA-binding chr04_pseudomo...    54   9e-08

>IMGA|Medtr5g075080.1 Helix-loop-helix DNA-binding
           chr05_pseudomolecule_IMGAG_V3 27271155-27270301 E
           EGN_Mt090430 20090702
          Length = 253

 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 140/252 (55%), Gaps = 31/252 (12%)

Query: 1   MLPFQTYYGFDHSQNRFVQEPTLVNVMEMDGAGESVLSSSSRLEKKSTEACKSHKEAERR 60
           + P + +YGF+          + ++  E+    E +    S+ E+KS EACKSH+EAERR
Sbjct: 2   LPPLRRFYGFE----------SWMDNKEL----EEINCDKSKSERKSKEACKSHREAERR 47

Query: 61  RRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAHVARQDRDSCCG----- 115
           RRQRINAH              DKASLLAEVV HVK L+K+A  +A +  D         
Sbjct: 48  RRQRINAHLNTLRSLLPNTTKSDKASLLAEVVQHVKRLKKEADEMANRHNDGESSSSCSG 107

Query: 116 -----SESESEKYWPFPGESDETILSYC---DGETKTMRVSVCCEDRPGLNRDLSQAIRS 167
                + +E  + WPFPGESDE  +SYC   +GE + M+V+VCCE+RPGLN DL+QAIRS
Sbjct: 108 EPGSVNSTEVVETWPFPGESDEATVSYCGKEEGEPRRMKVTVCCEERPGLNHDLTQAIRS 167

Query: 168 VKARAVKAEMMTVGGRTRXXXXXXXXXXX---XXXXXXXXXXXRRALKAVVENR-VSRSG 223
           V A+ V+AEMMTVGGRT+                          R LKAV+ENR    SG
Sbjct: 168 VLAKPVRAEMMTVGGRTKTVVVVEWPNGEGGDDVREEKVVEALERGLKAVIENRAFVDSG 227

Query: 224 LGQVVQRNKRLR 235
           +G ++   KR R
Sbjct: 228 MGPILLGRKRAR 239


>IMGA|Medtr5g033790.1 Helix-loop-helix DNA-binding
           chr05_pseudomolecule_IMGAG_V3 13767480-13768402 H
           EGN_Mt090430 20090702
          Length = 214

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 50  ACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAHVARQD 109
           A K H EAE+RRR RIN                DKAS+L E +  VK+L+K+A+ +    
Sbjct: 52  AAKKHSEAEKRRRMRINGQYDTLRSILPNLIKKDKASILVETIKQVKDLKKKASKL---- 107

Query: 110 RDSCCGSESESEKYWPFPGESDETILSYCDGETKTMRVSVCCEDRPGLNRDLSQAIRSVK 169
            +   G+  E +    FP  +D+  L  C+ +   ++ ++ CEDRPGL   +S+A+ S+K
Sbjct: 108 -EDSHGTSKEIK----FPSGADKLNLEKCNDDEGLVKATLSCEDRPGLMSSISRALLSMK 162

Query: 170 ARAVKAEMMTVGGRTR 185
           A+ VK EM+TVGGRTR
Sbjct: 163 AKVVKVEMVTVGGRTR 178


>IMGA|Medtr7g106450.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 24622238-24624377 E
           EGN_Mt090430 20090702
          Length = 247

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 23/147 (15%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           + ++  A K+HKEAE+RRR+RIN+H               KASLLA+VV  VK+L++Q +
Sbjct: 69  QDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNS---KASLLAKVVERVKDLKQQTS 125

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDE-TILSY---CDGETKTM-RVSVCCEDRPGLN 158
            + + +                 P E+DE T++S      GE + + + S+CCEDR  L 
Sbjct: 126 QITQLE---------------TVPSETDEITVISAGSDISGEGRLIFKASLCCEDRSDLI 170

Query: 159 RDLSQAIRSVKARAVKAEMMTVGGRTR 185
            DL + ++S+  + +KAEM T+GGRTR
Sbjct: 171 PDLIEILKSLHLKTLKAEMATLGGRTR 197


>IMGA|Medtr3g094180.1 Helix-loop-helix DNA-binding
           chr03_pseudomolecule_IMGAG_V3 22526916-22528835 E
           EGN_Mt090430 20090702
          Length = 260

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 29/157 (18%)

Query: 43  LEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQA 102
           +E ++  A KSH +AE+RRR RIN                DKA+LL  V+  VK+L+++A
Sbjct: 64  VEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKA 123

Query: 103 AHVARQDRDSCCGSESESEKYWPFPGESDETILSY---CDGETKTMRV-----------S 148
             V+R                   P E DE  + Y    + ET T +V           S
Sbjct: 124 MDVSR---------------VITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKAS 168

Query: 149 VCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
           VCC+DRP L  +L Q ++S++   VKA++ +VGGR +
Sbjct: 169 VCCDDRPELFSELIQVLKSLRLTTVKADIASVGGRIK 205


>IMGA|Medtr1g118050.1 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 25565342-25563380 E
           EGN_Mt090430 20090702
          Length = 338

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 23/157 (14%)

Query: 37  LSSSSRLEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVK 96
           +S+   +E K+  A KSH EAERRRR+RIN H              DKASLLAEV+ HVK
Sbjct: 145 MSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVK 204

Query: 97  ELRKQAAHVARQDRDSCCGSESESEKYWPFPGESDE-TILSYCD-------GETKTMRVS 148
           EL++Q + +A                  P P E DE T+ +  D       G    ++ S
Sbjct: 205 ELKRQTSLIAETS---------------PVPTECDELTVDAAADDEDYGSNGNKFIIKAS 249

Query: 149 VCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
           +CC+DR  L  +L + +++++ R +KA++ T+GGR +
Sbjct: 250 LCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVK 286


>IMGA|Medtr5g033970.1 Putative bHLH131 transcription factor,
           chr05_pseudomolecule_IMGAG_V3 13862401-13860232 H
           EGN_Mt090430 20090702
          Length = 133

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 9/103 (8%)

Query: 83  DKASLLAEVVHHVKELRKQAAHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGET 142
           DKAS+L E +  VK+L+K+A+ +     +   G+  E +    FP  +D+  L  C+ + 
Sbjct: 4   DKASILVETIKQVKDLKKKASKL-----EDSHGTSKEIK----FPSGADKLNLEKCNDDE 54

Query: 143 KTMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
             ++ ++ CEDRPGL   +S+A+ S+KA+ VK EM+TVGGRTR
Sbjct: 55  GLVKATLSCEDRPGLMSSISRALLSMKAKVVKVEMVTVGGRTR 97


>IMGA|Medtr4g109590.1 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 24584689-24582319 E
           EGN_Mt090430 20090702
          Length = 256

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 29/179 (16%)

Query: 10  FDHSQNRFVQEPTLVNVMEMDGAGESVLSSSSRLEKKSTEACKSHKEAERRRRQRINAHX 69
            D  +   V+EP     ++M+G G S         ++S EA K+H EAERRRR RINAH 
Sbjct: 40  LDRERGELVEEP-----VKMEGKGVST-------TERSVEALKNHSEAERRRRARINAHL 87

Query: 70  XXXXXXXXXXXXXDKASLLAEVVHHVKELRK---QAAHVARQDRDSCCGSESESEKYWPF 126
                        DKASLL EVV H+KEL++   QA       +D+   S  E E  W  
Sbjct: 88  DTLRCVIPGALKMDKASLLGEVVRHLKELKRNETQACEGLMIPKDNDEISVEEQEGGW-- 145

Query: 127 PGESDETILSYCDGETKTMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
                       +G   +++ S+CCE +PGL  ++ QA+ ++    +KA++ T G R +
Sbjct: 146 ------------NGFPFSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGDRMK 192


>IMGA|Medtr4g128050.1 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 29982732-29979973 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 20/147 (13%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXX-XXXXXXXXXXDKASLLAEVVHHVKELRKQA 102
           E K   + K+H+EAERRRR+RIN H               DKA++LAEV+  VKEL+K A
Sbjct: 69  EDKGLASLKNHREAERRRRERINGHLGTLRGLVASTHQKMDKATILAEVISQVKELKKNA 128

Query: 103 AHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGET----KTMRVSVCCEDRPGLN 158
                           E+ K +  P E DE  +   D +      +   ++CC+ +P + 
Sbjct: 129 M---------------EASKGFLIPTEVDEVKVEPYDIKLGYGCMSYIATICCDYQPEIL 173

Query: 159 RDLSQAIRSVKARAVKAEMMTVGGRTR 185
            DL +AI +++ + VKAEM T+  R +
Sbjct: 174 CDLKKAIDALQLQLVKAEMSTLESRMK 200