Jatropha Genome Database

JcCB0004891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.10 + phase: 0 
         (215 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g149250.1 PWWP chr03_pseudomolecule_IMGAG_V3 38994639...    99   1e-21
IMGA|Medtr3g149250.2 PWWP chr03_pseudomolecule_IMGAG_V3 38994639...    95   3e-20
IMGA|Medtr3g149250.3 PWWP chr03_pseudomolecule_IMGAG_V3 38994639...    58   4e-09
IMGA|Medtr7g124060.3 PWWP chr07_pseudomolecule_IMGAG_V3 29045534...    49   1e-06
IMGA|Medtr7g124060.2 PWWP chr07_pseudomolecule_IMGAG_V3 29045441...    49   1e-06
IMGA|Medtr7g124080.1 PWWP chr07_pseudomolecule_IMGAG_V3 29060918...    49   1e-06
IMGA|Medtr7g124060.1 PWWP chr07_pseudomolecule_IMGAG_V3 29045378...    49   1e-06

>IMGA|Medtr3g149250.1 PWWP chr03_pseudomolecule_IMGAG_V3
           38994639-38990012 E EGN_Mt090430 20090702
          Length = 215

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 26/190 (13%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNV----SGDREIKG--VRVRLIGSYEYMYVDPIKCRSEF 86
           GD+  VKL G SWWPA V            R+ +   V VR+ GS E++ V+P++  SEF
Sbjct: 36  GDMIHVKLPGGSWWPAQVVNDEAILQSFQPRKCRTGEVLVRIYGSQEFLNVNPVRSCSEF 95

Query: 87  HITLEKNNGSYEEIFRKALEQDISQSN---SSRVKGKVTKSKEGEKAISKASKQDGVKRK 143
            + L+ NN    +I  + L++D+  S    +S+ KG  +     EK  SK+      K  
Sbjct: 96  ELILKNNNADLRKILEEGLQKDLPSSKNKPASKAKGMPS-----EKTDSKS------KSN 144

Query: 144 LKLDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAP 203
            K++   P K  K+   ++DG        S S +  + G+ QELS+RR +VMQ+LGL+AP
Sbjct: 145 KKVEEQTPAKRQKQNKESKDG-----DLASPSCETTASGKLQELSSRRIRVMQSLGLVAP 199

Query: 204 SGSPFHQKDR 213
            GSPF  KDR
Sbjct: 200 LGSPF-TKDR 208


>IMGA|Medtr3g149250.2 PWWP chr03_pseudomolecule_IMGAG_V3
           38994639-38990012 E EGN_Mt090430 20090702
          Length = 178

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 24/184 (13%)

Query: 38  VKLHGDSWWPAVVFGSNV----SGDREIKG--VRVRLIGSYEYMYVDPIKCRSEFHITLE 91
           VKL G SWWPA V            R+ +   V VR+ GS E++ V+P++  SEF + L+
Sbjct: 4   VKLPGGSWWPAQVVNDEAILQSFQPRKCRTGEVLVRIYGSQEFLNVNPVRSCSEFELILK 63

Query: 92  KNNGSYEEIFRKALEQDISQSNSSRVKGKVTKSKEGEKAISKASKQDGVKRKL--KLDSL 149
            NN    +I  + L++D+  S          K+K   KA    S++   K K   K++  
Sbjct: 64  NNNADLRKILEEGLQKDLPSS----------KNKPASKAKGMPSEKTDSKSKSNKKVEEQ 113

Query: 150 NPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAPSGSPFH 209
            P K  K+   ++DG        S S +  + G+ QELS+RR +VMQ+LGL+AP GSPF 
Sbjct: 114 TPAKRQKQNKESKDG-----DLASPSCETTASGKLQELSSRRIRVMQSLGLVAPLGSPFT 168

Query: 210 QKDR 213
            KDR
Sbjct: 169 -KDR 171


>IMGA|Medtr3g149250.3 PWWP chr03_pseudomolecule_IMGAG_V3
           38994639-38990012 E EGN_Mt090430 20090702
          Length = 142

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 20/136 (14%)

Query: 38  VKLHGDSWWPAVVFGSNV----SGDREIKG--VRVRLIGSYEYMYVDPIKCRSEFHITLE 91
           VKL G SWWPA V            R+ +   V VR+ GS E++ V+P++  SEF + L+
Sbjct: 4   VKLPGGSWWPAQVVNDEAILQSFQPRKCRTGEVLVRIYGSQEFLNVNPVRSCSEFELILK 63

Query: 92  KNNGSYEEIFRKALEQDISQSN---SSRVKGKVTKSKEGEKAISKASKQDGVKRKLKLDS 148
            NN    +I  + L++D+  S    +S+ KG  +     EK  SK+      K   K++ 
Sbjct: 64  NNNADLRKILEEGLQKDLPSSKNKPASKAKGMPS-----EKTDSKS------KSNKKVEE 112

Query: 149 LNPEKNTKRKTSNRDG 164
             P K  K+   ++DG
Sbjct: 113 QTPAKRQKQNKESKDG 128


>IMGA|Medtr7g124060.3 PWWP chr07_pseudomolecule_IMGAG_V3
           29045534-29050309 E EGN_Mt090430 20090702
          Length = 243

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNVS-GDREIKG-VRVRLIGSYEYMYVDPIKCRSEFHITL 90
           G + W +     WWPA +   + +  DR   G V V+  G++   ++DP    S F  + 
Sbjct: 75  GTVVWARTACQMWWPAEIMEESCALSDRVNDGNVLVQFYGNHPSAWIDPATDISIFEDSF 134

Query: 91  EK--NNGS--YEEIFRKALEQDISQSNSSRV-KGKVTKSKEGEKAISKASKQDGVKRKLK 145
           E+  NN S  +++  ++AL++    S+   +   + T S + +++  K +     +    
Sbjct: 135 EERSNNPSSDFQDALKQALQRKTQLSSCQNLSPDRSTYSNQQDRSAGKCTSPSSSR---- 190

Query: 146 LDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAPSG 205
             ++N  +  +R    R       K K    +   P +S E   RR K+M+ LGL  P G
Sbjct: 191 --TINDFQEKRRGKRER-------KPKVHFDEVTHPMKS-ETKDRRLKIMRYLGLAPPVG 240

Query: 206 SPF 208
           SPF
Sbjct: 241 SPF 243


>IMGA|Medtr7g124060.2 PWWP chr07_pseudomolecule_IMGAG_V3
           29045441-29050309 E EGN_Mt090430 20090702
          Length = 306

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNVS-GDREIKG-VRVRLIGSYEYMYVDPIKCRSEFHITL 90
           G + W +     WWPA +   + +  DR   G V V+  G++   ++DP    S F  + 
Sbjct: 138 GTVVWARTACQMWWPAEIMEESCALSDRVNDGNVLVQFYGNHPSAWIDPATDISIFEDSF 197

Query: 91  EK--NNGS--YEEIFRKALEQDISQSNSSRV-KGKVTKSKEGEKAISKASKQDGVKRKLK 145
           E+  NN S  +++  ++AL++    S+   +   + T S + +++  K +     +    
Sbjct: 198 EERSNNPSSDFQDALKQALQRKTQLSSCQNLSPDRSTYSNQQDRSAGKCTSPSSSR---- 253

Query: 146 LDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAPSG 205
             ++N  +  +R    R       K K    +   P +S E   RR K+M+ LGL  P G
Sbjct: 254 --TINDFQEKRRGKRER-------KPKVHFDEVTHPMKS-ETKDRRLKIMRYLGLAPPVG 303

Query: 206 SPF 208
           SPF
Sbjct: 304 SPF 306


>IMGA|Medtr7g124080.1 PWWP chr07_pseudomolecule_IMGAG_V3
           29060918-29066307 E EGN_Mt090430 20090702
          Length = 259

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNVS-GDREIKG-VRVRLIGSYEYMYVDPIKCRSEFHITL 90
           G + W +     WWPA +   + +  DR   G V V+  G++   ++DP    S F  + 
Sbjct: 91  GTVVWARTACQMWWPAEIMEESCALSDRVNDGNVLVQFYGNHPSAWIDPATDISIFEDSF 150

Query: 91  EK--NNGS--YEEIFRKALEQDISQSNSSRV-KGKVTKSKEGEKAISKASKQDGVKRKLK 145
           E+  NN S  +++  ++AL++    S+   +   + T S + +++  K +     +    
Sbjct: 151 EERSNNPSSDFQDALKQALQRKTQLSSCQNLSPDRSTYSNQQDRSAGKCTSPSSSR---- 206

Query: 146 LDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAPSG 205
             ++N  +  +R    R       K K    +   P +S E   RR K+M+ LGL  P G
Sbjct: 207 --TINDFQEKRRGKRER-------KPKVHFDEVTHPMKS-ETKDRRLKIMRYLGLAPPVG 256

Query: 206 SPF 208
           SPF
Sbjct: 257 SPF 259


>IMGA|Medtr7g124060.1 PWWP chr07_pseudomolecule_IMGAG_V3
           29045378-29050309 E EGN_Mt090430 20090702
          Length = 311

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNVS-GDREIKG-VRVRLIGSYEYMYVDPIKCRSEFHITL 90
           G + W +     WWPA +   + +  DR   G V V+  G++   ++DP    S F  + 
Sbjct: 143 GTVVWARTACQMWWPAEIMEESCALSDRVNDGNVLVQFYGNHPSAWIDPATDISIFEDSF 202

Query: 91  EK--NNGS--YEEIFRKALEQDISQSNSSRV-KGKVTKSKEGEKAISKASKQDGVKRKLK 145
           E+  NN S  +++  ++AL++    S+   +   + T S + +++  K +     +    
Sbjct: 203 EERSNNPSSDFQDALKQALQRKTQLSSCQNLSPDRSTYSNQQDRSAGKCTSPSSSR---- 258

Query: 146 LDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVMQTLGLIAPSG 205
             ++N  +  +R    R       K K    +   P +S E   RR K+M+ LGL  P G
Sbjct: 259 --TINDFQEKRRGKRER-------KPKVHFDEVTHPMKS-ETKDRRLKIMRYLGLAPPVG 308

Query: 206 SPF 208
           SPF
Sbjct: 309 SPF 311