Jatropha Genome Database
- JcCB0004861.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0004861.10 - phase: 0 /pseudo
(337 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g024370.1 Alpha amylase, catalytic subdomain; Alpha-a... 173 1e-43
IMGA|Medtr1g024420.1 Alpha amylase, catalytic subdomain; Alpha-a... 117 9e-27
IMGA|Medtr7g012510.1 Alpha amylase, catalytic region; Alpha-amyl... 111 6e-25
IMGA|Medtr1g024370.2 Alpha amylase, catalytic subdomain; Alpha-a... 73 2e-13
IMGA|Medtr1g032120.1 Alpha amylase, catalytic region chr01_pseud... 49 3e-06
IMGA|Medtr1g032110.1 Alpha amylase, catalytic region chr01_pseud... 49 4e-06
>IMGA|Medtr1g024370.1 Alpha amylase, catalytic subdomain;
Alpha-amylase beta-sheet, C-terminal;
chr01_pseudomolecule_IMGAG_V3 5777523-5780031 E
EGN_Mt090430 20090702
Length = 421
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 110/198 (55%), Gaps = 47/198 (23%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
GFNWES +GGWYN L N +P+LA++GITHVWLPPPS SV +
Sbjct: 29 GFNWES-SNKGGWYNSLKNLIPDLANAGITHVWLPPPSQSVGPQGYLPGRLYDLDASKYG 87
Query: 45 ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
E++D+RGI+ +FEGGTP +LDWGPSFIC
Sbjct: 88 SKDDLKSLIAAFKDKGINCLADIVINHRTAERKDDRGIYCLFEGGTPDSKLDWGPSFICK 147
Query: 75 DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIF 134
DDT YSDG GN D+G + APDIDH+NP+VQ+ LS+WM WLK EIGF GWRFDF +
Sbjct: 148 DDTAYSDGTGNLDSGEGYQAAPDIDHLNPQVQKELSEWMNWLKTEIGFSGWRFDFVKGYA 207
Query: 135 TCFYKDINDKQKAKFCSG 152
K + F G
Sbjct: 208 PSITKIYMENTSPDFAVG 225
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
LK++I KL +R RN I S + LA+DAD Y+A ID KII K+GP D GNL+P
Sbjct: 350 LKDQIAKLTAIRQRNGINMKSTVNILAADADLYVAKIDNKIIVKIGPRMDLGNLIPSNFH 409
Query: 328 IAASGIDYTV 337
+A SG DY V
Sbjct: 410 VATSGQDYAV 419
>IMGA|Medtr1g024420.1 Alpha amylase, catalytic subdomain;
Alpha-amylase beta-sheet, C-terminal;
chr01_pseudomolecule_IMGAG_V3 5791628-5793616 H
EGN_Mt090430 20090702
Length = 402
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 86/164 (52%), Gaps = 50/164 (30%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHS-------------------- 40
GF W S + EGGW+NFL VP++A +G+ +VWLPPPS+S
Sbjct: 29 GFKWASSEKEGGWWNFLKTKVPDIADAGVEYVWLPPPSNSHDDGPQGYLPKRLYDLDTSK 88
Query: 41 ----------VSA------------------EEKQDNRGIWSIFEGGTPGDRLDWGPSFI 72
V+A E+ DN G+ SIFEGGTP +RLDW S+I
Sbjct: 89 YGNKQELKSLVAAFREQGVKSISDIVINHRTAERLDNNGL-SIFEGGTPDNRLDWDVSYI 147
Query: 73 CSDDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWL 116
C +D + G GN DTG D+ APD+DH NP+VQ+ LSDWM W
Sbjct: 148 CGNDVQFK-GTGNNDTGDDWGGAPDVDHTNPKVQQELSDWMNWF 190
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 44/70 (62%)
Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
L E I KL +R RN I S + LA++ D YMA I KII K+GP D GNL+PP +Q
Sbjct: 329 LMEPIKKLTAIRKRNGITATSNVNILAAENDLYMANIGNKIIVKIGPKLDLGNLLPPNAQ 388
Query: 328 IAASGIDYTV 337
+A SG DY V
Sbjct: 389 VATSGQDYAV 398
>IMGA|Medtr7g012510.1 Alpha amylase, catalytic region; Alpha-amylase
beta-sheet, C-terminal chr07_pseudomolecule_IMGAG_V3
3265803-3252876 H EGN_Mt090430 20090702
Length = 1087
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 53/197 (26%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
FNWESW+ + WY L++ +L+ G+T VWLPPP+ SV+A+
Sbjct: 573 AFNWESWRRQ--WYQELASKAADLSKCGVTAVWLPPPTESVAAQGYMPSDLYNLNSSYGS 630
Query: 45 -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
KQ G+W+IF G +L WGP I D
Sbjct: 631 VEELKYCIEELHTHDLLALGDVVLNHRCAHKQSPNGVWNIF-----GGKLAWGPEAIVCD 685
Query: 76 DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
D + G+GNP +G F+ AP+IDH V++ + +W+ WL+ +IGFDGWR DF +
Sbjct: 686 DPHFQ-GRGNPSSGDIFHAAPNIDHSQEFVRKDIKEWLNWLRSDIGFDGWRLDFVKGFSG 744
Query: 136 CFYKDINDKQKAKFCSG 152
+ K+ + F G
Sbjct: 745 TYVKEYIEASNPVFAIG 761
>IMGA|Medtr1g024370.2 Alpha amylase, catalytic subdomain;
Alpha-amylase beta-sheet, C-terminal;
chr01_pseudomolecule_IMGAG_V3 5777523-5780031 E
EGN_Mt090430 20090702
Length = 236
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
LK++I KL +R RN I S + LA+DAD Y+A ID KII K+GP D GNL+P
Sbjct: 165 LKDQIAKLTAIRQRNGINMKSTVNILAADADLYVAKIDNKIIVKIGPRMDLGNLIPSNFH 224
Query: 328 IAASGIDYTV 337
+A SG DY V
Sbjct: 225 VATSGQDYAV 234
>IMGA|Medtr1g032120.1 Alpha amylase, catalytic region
chr01_pseudomolecule_IMGAG_V3 7911048-7912579 E
EGN_Mt090430 20090702
Length = 204
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 80 SDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFTCFYK 139
+ G GN +TGA F+ P+IDH V++ + W+ WL+ +GF +RFD+A+ + K
Sbjct: 21 TGGLGNRNTGAIFHGFPNIDHTQDFVRKDIIGWLQWLRHNVGFQDFRFDYAKGYSPKYVK 80
Query: 140 DINDKQKAKFCSGG-----NMEGSCL 160
+ + K G N GS L
Sbjct: 81 EYIEGPKPMLSVGEYWDTCNYNGSTL 106
>IMGA|Medtr1g032110.1 Alpha amylase, catalytic region
chr01_pseudomolecule_IMGAG_V3 7909817-7911046 F
EGN_Mt090430 20090702
Length = 127
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE 44
FNWES K + W+ L + VP++A +GIT WLPPP+HS S E
Sbjct: 50 AFNWESHKYD--WWANLESKVPDIAKAGITSAWLPPPTHSFSPE 91