Jatropha Genome Database

JcCB0004801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004801.10 - phase: 0 
         (209 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096660.1 Transcription initiation factor TFIID subun...    50   6e-07

>IMGA|Medtr7g096660.1 Transcription initiation factor TFIID subunit
           11, related chr07_pseudomolecule_IMGAG_V3
           21682520-21678660 E EGN_Mt090430 20090702
          Length = 187

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 24/27 (88%)

Query: 171 PLAEVDLDNILPSRTRRRAAQPGVYIA 197
           PLAEVDLDNILPSRTRRR AQ GV I+
Sbjct: 139 PLAEVDLDNILPSRTRRRTAQSGVRIS 165