Jatropha Genome Database
- JcCB0004761.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0004761.20 - phase: 0 /TE/pseudo
(300 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g024620.1 hypothetical protein chr08_pseudomolecule_I... 191 4e-49
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 186 2e-47
IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H... 162 3e-40
IMGA|Medtr8g037100.1 hypothetical protein chr08_pseudomolecule_I... 158 2e-39
IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse transc... 156 1e-38
IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse transc... 150 6e-37
IMGA|AC225611_8.1 contains similarity to reverse trancriptase, r... 145 2e-35
IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse transc... 143 1e-34
IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse transc... 143 1e-34
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H... 142 3e-34
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 140 5e-34
IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse transc... 140 9e-34
IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase... 138 3e-33
IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse transc... 134 5e-32
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 129 2e-30
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 127 8e-30
IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse transc... 126 1e-29
IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse transc... 125 3e-29
IMGA|Medtr1g117580.1 hypothetical protein chr01_pseudomolecule_I... 117 8e-27
IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse transc... 108 4e-24
IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase... 107 9e-24
IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase... 99 3e-21
IMGA|Medtr4g084240.1 Polynucleotidyl transferase, Ribonuclease H... 97 1e-20
IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase... 97 1e-20
IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750, ... 96 2e-20
IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H... 95 4e-20
IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse transc... 94 9e-20
IMGA|Medtr3g024330.1 RNA-directed DNA polymerase (reverse transc... 93 2e-19
IMGA|Medtr7g084960.1 RNA-directed DNA polymerase (reverse transc... 92 4e-19
IMGA|AC146793_2.1 RNA-directed DNA polymerase, related AC146793.... 86 3e-17
IMGA|Medtr3g103220.1 RNA-directed DNA polymerase (reverse transc... 84 1e-16
IMGA|AC233662_12.1 Lipocalin AC233662.1 48072-47128 H EGN_Mt0904... 84 1e-16
IMGA|AC233657_3.1 Lipocalin AC233657.1 16055-16999 H EGN_Mt09043... 84 1e-16
IMGA|Medtr8g105650.1 reverse transcriptase, putative; 100033-105... 83 2e-16
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H... 81 8e-16
IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3 220... 81 8e-16
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 80 1e-15
IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V... 79 2e-15
IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750, ... 78 6e-15
IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase... 77 1e-14
IMGA|Medtr5g021560.1 RNA-directed DNA polymerase (reverse transc... 77 1e-14
IMGA|Medtr5g073410.1 RNA-directed DNA polymerase (reverse transc... 76 3e-14
IMGA|Medtr4g107070.1 Polynucleotidyl transferase, Ribonuclease H... 74 7e-14
IMGA|Medtr7g068050.1 hypothetical protein chr07_pseudomolecule_I... 72 4e-13
IMGA|Medtr1g147120.1 Polynucleotidyl transferase, Ribonuclease H... 72 5e-13
IMGA|Medtr1g089830.1 Polynucleotidyl transferase, Ribonuclease H... 71 8e-13
IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse transc... 70 1e-12
IMGA|Medtr5g090160.1 Haem peroxidase, plant/fungal/bacterial chr... 69 3e-12
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 69 3e-12
IMGA|Medtr7g021160.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V... 69 3e-12
IMGA|Medtr5g073420.1 RNA-directed DNA polymerase (reverse transc... 69 3e-12
IMGA|Medtr3g030620.1 RNA-directed DNA polymerase (reverse transc... 68 5e-12
IMGA|AC225507_9.1 Polynucleotidyl transferase, Ribonuclease H fo... 68 5e-12
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 67 8e-12
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 67 8e-12
IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse transc... 67 1e-11
IMGA|Medtr7g068430.1 RNA-directed DNA polymerase (reverse transc... 66 2e-11
IMGA|Medtr3g021630.1 RNA-directed DNA polymerase (reverse transc... 64 7e-11
IMGA|Medtr1g025190.1 RNA-directed DNA polymerase, related chr01_... 63 2e-10
IMGA|Medtr1g016440.1 probable reverse transcriptase At2g02650 -,... 61 8e-10
IMGA|Medtr1g016370.1 probable reverse transcriptase At2g02650 -,... 61 8e-10
IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse transc... 61 8e-10
IMGA|Medtr1g149770.1 contains similarity to reverse trancriptase... 60 1e-09
IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse transcri... 60 2e-09
IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse transcri... 60 2e-09
IMGA|Medtr2g055540.1 RNA-directed DNA polymerase (reverse transc... 60 2e-09
IMGA|Medtr8g128940.1 RNA-directed DNA polymerase, related chr08_... 60 2e-09
IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H... 58 5e-09
IMGA|Medtr5g040610.1 RNA-directed DNA polymerase (reverse transc... 58 7e-09
IMGA|AC232874_27.1 hypothetical protein AC232874.1 84446-85505 H... 57 1e-08
IMGA|Medtr2g014330.1 hypothetical protein chr02_pseudomolecule_I... 57 2e-08
IMGA|Medtr2g013680.1 hypothetical protein chr02_pseudomolecule_I... 57 2e-08
IMGA|Medtr4g157980.1 contains similarity to reverse trancriptase... 57 2e-08
IMGA|Medtr6g092910.1 H+-transporting two-sector ATPase, alpha/be... 56 3e-08
IMGA|Medtr2g045730.1 RNA-directed DNA polymerase (reverse transc... 55 4e-08
IMGA|Medtr3g147880.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 54 1e-07
IMGA|Medtr2g056130.1 hypothetical protein chr02_pseudomolecule_I... 54 1e-07
IMGA|Medtr8g026870.1 Polynucleotidyl transferase, Ribonuclease H... 54 1e-07
IMGA|Medtr6g093340.1 hypothetical protein chr06_pseudomolecule_I... 54 1e-07
IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H... 53 1e-07
IMGA|AC235675_13.1 RNA-directed DNA polymerase (reverse transcri... 53 2e-07
IMGA|Medtr2g114260.1 hypothetical protein chr02_pseudomolecule_I... 52 3e-07
IMGA|Medtr5g025230.1 RNA-directed DNA polymerase (reverse transc... 52 3e-07
IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse transc... 52 4e-07
IMGA|Medtr8g133770.1 hypothetical protein chr08_pseudomolecule_I... 51 5e-07
IMGA|Medtr5g039730.1 RNA-directed DNA polymerase (reverse transc... 51 6e-07
IMGA|Medtr3g013410.1 RNA-directed DNA polymerase (reverse transc... 51 6e-07
IMGA|Medtr1g009220.1 contains similarity to reverse trancriptase... 51 6e-07
IMGA|Medtr4g036130.1 Polynucleotidyl transferase, Ribonuclease H... 51 6e-07
IMGA|Medtr5g086160.1 RNA-directed DNA polymerase (reverse transc... 51 7e-07
IMGA|Medtr2g129530.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr3g114700.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr8g119160.1 hypothetical protein chr08_pseudomolecule_I... 50 2e-06
IMGA|Medtr1g105630.1 H+-transporting two-sector ATPase, alpha/be... 50 2e-06
IMGA|Medtr2g074460.1 RNA-directed DNA polymerase (reverse transc... 49 2e-06
IMGA|Medtr6g015400.1 probable reverse transcriptase At2g02650 -,... 49 3e-06
IMGA|Medtr4g107980.1 hypothetical protein chr04_pseudomolecule_I... 49 3e-06
IMGA|Medtr2g073860.1 hypothetical protein chr02_pseudomolecule_I... 49 4e-06
IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 49 4e-06
IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H... 48 5e-06
IMGA|AC235567_37.1 RNA-directed DNA polymerase (reverse transcri... 47 8e-06
IMGA|Medtr7g077260.1 RNA-directed DNA polymerase (reverse transc... 47 8e-06
IMGA|Medtr5g022410.1 Leucine-rich repeat chr05_pseudomolecule_IM... 47 1e-05
>IMGA|Medtr8g024620.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 4663551-4665766 E
EGN_Mt090430 20090702
Length = 587
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 23/301 (7%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M VFLLP +L DE+ K N FWWG KGIHWLSWD++ K GGM F++L FN+
Sbjct: 67 MSVFLLPTTLVDEIEKMVNGFWWGHGGSRRKGIHWLSWDKLTVHKNYGGMGFKDLTAFNL 126
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
ML KQGW+ T+T+ L ++FKA++F D+L A LG P FV ++I ++ ++++ G +
Sbjct: 127 VMLGKQGWKFQTQTNCLVSKLFKARYFPSSDYLGAKLGHKPSFVWRSIFSAKRVIREGGK 186
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
+ ++ V++ ++ +L H + W+ D I F
Sbjct: 187 CVSGEGQNSEVIQHA---------------------KIHSLIDHNLRCWNQDVIHCYFDN 225
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWR 240
+ + I+ PL D L+W ++ G YSV+S+Y + ++ G W +W+
Sbjct: 226 STAQQILKTPLFRQVEEDQLIWKAEKNGHYSVRSAYRICMEEIGDNSYLHRPGFWNGIWK 285
Query: 241 LSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
L P VK+ +WR+ +PT+ +L ++ ++ C CDG E + HVL C+RARS+W
Sbjct: 286 LKASPKVKNLIWRICLGCLPTRAKLLDKRVNCTSMCSMCDGNYEDDLHVLFDCQRARSIW 345
Query: 299 R 299
R
Sbjct: 346 R 346
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 155/275 (56%), Gaps = 27/275 (9%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M VFLLP S++D++ K N FWWG+K +G GI W+SW+R+ RK+ GGM FR++H F++
Sbjct: 626 MSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSWERLTMRKEWGGMGFRHIHGFDL 685
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AM KQ W LT D + RIFKAK+F+ +FL ASLG NP +V ++I +S LK G +
Sbjct: 686 AMSGKQCWNFLTNPDAMVSRIFKAKYFTNENFLGASLGHNPSYVWRSIWSSRIFLKTGYQ 745
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
WR I DGS++ V +L + + W+ I N F
Sbjct: 746 WR----------------------IGDGSTTA----TVSHLIDAQTRSWNEPLIRNNFNL 779
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWR 240
DV I+ IPL D ++W + ++G+YSVK++Y + + V E + KLW
Sbjct: 780 RDVDEILKIPLLHCEQNDAIIWRFDKKGVYSVKNAYRVCVDVLINRDEWKVEGDRNKLWS 839
Query: 241 LSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRK 274
L +PP VK F+WR+ R+ +P + RL +G+ + K
Sbjct: 840 LPIPPKVKHFMWRLGRDCLPNRQRLNCKGVRLSLK 874
>IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 9482517-9480709 E
EGN_Mt090430 20090702
Length = 602
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 10/305 (3%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +LLP+SL +++ + FWWG + + IHW+S + +KK+GGM F+ L FN+
Sbjct: 37 MSCYLLPISLCEDIERAVCNFWWG-GTEHTRKIHWVSKQILFKQKKEGGMGFKILRDFNL 95
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ WRL D+L + KAK++ D L A+ G NP + +++ S +L G
Sbjct: 96 AMLAKQIWRLHIYPDSLLAKCLKAKYYPNSDVLKATAGYNPSYAWRSLQKSIWILNKGCC 155
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
WR+ + +++ W+P + + + + P V++L W+ + + F
Sbjct: 156 WRIGNGDQVHIQSDNWLPYNNGYKPIYSNPNSPP--MVKDLLTEFPFDWNYNLLQQNFLP 213
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSY-----FMALKVFGKEPERRDGEIW 235
D I +P+ N PDVL+W + G Y+VKS Y + A + +W
Sbjct: 214 MDSSQIAQLPIIHPNKPDVLMWMFDLSGSYTVKSGYNAIQNWKATASNDSSASSVNNTLW 273
Query: 236 GKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCD-GEQEINHVLVTCER 293
KLW L ++P K +WR+L N +P +D L RG+ C C+ E+ + H+ + C
Sbjct: 274 QKLWNLKTIPRHKSLLWRILNNSLPLRDNLLRRGIQCSILCPRCNIKEETMTHLFMRCSH 333
Query: 294 ARSVW 298
+ VW
Sbjct: 334 SERVW 338
>IMGA|Medtr8g037100.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 7957038-7958530 H
EGN_Mt090430 20090702
Length = 410
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 2/241 (0%)
Query: 60 VAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGV 119
+AML KQGWR+LT+ DTL RI+KA++F R +FL A LG NP FV ++I S +L+ G
Sbjct: 1 MAMLGKQGWRILTKPDTLIARIYKARYFPRCNFLEAELGHNPSFVWRSIYKSKFILRAGS 60
Query: 120 RWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFC 179
RW++ D I+V W+ + D ++ + RV + K WD+ + ++F
Sbjct: 61 RWKIGDGMSISVWNNYWMKDNVTIFPLDDVATTLANLRVSDCLLPNQKSWDVPFLHSIFS 120
Query: 180 ANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLW 239
V IV PL D L+W + YSV+S+Y + L + W +W
Sbjct: 121 EQIVEHIVATPLYSSVREDQLIWKKENNEEYSVRSAYRLCLNELLDTSHFKVEGAWDLVW 180
Query: 240 RLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSV 297
+L VPP VK+ +WR+ RN +PT+ RLR++G++ C C+ E+E + H+L C + ++
Sbjct: 181 KLKVPPRVKNLIWRICRNFLPTRKRLRDKGVNCTTVCALCNLEEEGSMHLLFKCAGSMNI 240
Query: 298 W 298
W
Sbjct: 241 W 241
>IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
25061037-25062481 E EGN_Mt090430 20090702
Length = 407
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 8/305 (2%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M F+LP L ++ K FWWG D K +HW+S ++ K GG+ F+ L FN+
Sbjct: 85 MSCFMLPKGLCTKIEKAICSFWWG-TTDKNKKMHWVSKKKLFRSKHSGGLGFKTLRDFNL 143
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML K+ R T ++L + FKA ++ D L A +G+ P + K+I + ++ G
Sbjct: 144 AMLAKKVRRFYTNPNSLIAKCFKANYYPHTDILQAKVGNYPSYAWKSIQNAIWVISKGSC 203
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
WR+ D IN+ + W+P + RV++L ++ W+ + + F +
Sbjct: 204 WRIGDGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNRVKDLINNQESLWNKVILEDQFIS 263
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSY-----FMALKVFGKEPERRDGEIW 235
++ I IPL +PD L+W + GIYSVKS Y + ++ + IW
Sbjct: 264 INIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIW 323
Query: 236 GKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCER 293
K+W L ++P K +WR+L + +P + LR RG+ C C + E I H+ ++C
Sbjct: 324 KKIWSLHTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPL 383
Query: 294 ARSVW 298
++ VW
Sbjct: 384 SKRVW 388
>IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
12265782-12266442 H EGN_Mt090430 20090702
Length = 195
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 104/173 (60%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +F LP SL DE+ K N FWWG KGIH +SWD++ KKDGGMSF++L FN+
Sbjct: 1 MSLFTLPSSLCDEIEKMMNSFWWGHSGSHRKGIHRMSWDKLSMHKKDGGMSFKSLGTFNM 60
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQGWR+LT+ DTL RI+KA++F R +FL A LG NP FV ++I S +L+ G R
Sbjct: 61 AMLGKQGWRILTKPDTLIARIYKARYFPRCNFLEAELGHNPSFVWRSICKSKFILRAGSR 120
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
W++ D I+V W+ + D ++ + RV + K WD K
Sbjct: 121 WKIGDGTSISVWNNYWMKDNVTIFPLDDVATTLANLRVSDCLLPNQKSWDCVK 173
>IMGA|AC225611_8.1 contains similarity to reverse trancriptase,
related, putative AC225611.10 67770-68780 H EGN_Mt090430
20090702
Length = 336
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 137/271 (50%), Gaps = 9/271 (3%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP S+ D + + FWWG + + IHW+ D + K DGGM FRNL FN+
Sbjct: 53 MSCFLLPKSICDRIERAICSFWWG-SNETKRKIHWIKKDHLFKFKHDGGMGFRNLRDFNL 111
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ WRL T+ +L R +KA+++ D L S G NP + ++I S ++ G
Sbjct: 112 AMLAKQVWRLHTQPQSLIARCYKARYYPNSDVLQVSQGYNPSYAWRSISQSIWIINKGSC 171
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
R+ + + + + WIP S+F + V++L G W+ D + F
Sbjct: 172 KRIGNGYNTKIWEDNWIPYHSNFKVLSPKLDTTNINLVKDLIQDNGTEWNTDILQANFIP 231
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERR------DGEI 234
+ I IPL N+ D L+W G+Y+VKS Y A++ + + + R +I
Sbjct: 232 YEQDLIKQIPLINHNNSDELMWMKDTDGLYTVKSGY-QAIQSWKQNDQDRPTTSNTSPKI 290
Query: 235 WGKLWRL-SVPPVKDFVWRVLRNVVPTKDRL 264
W KLW L ++P K +WR++ N +P ++
Sbjct: 291 WKKLWALQTIPRHKMLMWRIINNALPINSKM 321
>IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35324945-35323011 H EGN_Mt090430 20090702
Length = 613
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 41/308 (13%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L D++ K FWWG D + IHW + + K +GGM F L FN+
Sbjct: 77 MSCFLLPKGLCDKIEKAVCAFWWG-STDNKRKIHWTKKENLFKSKLEGGMGFNILRDFNL 135
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ WR TE ++L R +KAK++ + L A++G+NP + ++I + ++K G
Sbjct: 136 AMLAKQDWRFHTEPNSLISRCYKAKYYPHCNVLQATIGNNPSYAWRSIFNALWIIKKGSC 195
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
WR+ + + ++L W+ + + N F
Sbjct: 196 WRIGNGQ-------------------------------EDLIMVNSSTWNSELLNNQFLG 224
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGK------EPERRDGEI 234
D AI IP+ D L+W +++ G Y+VKS Y A++++ + ++
Sbjct: 225 IDTEAIEQIPIIDIFHRDTLMWMFEKTGSYTVKSGY-TAIQIWKNGSQNSPSSSSENTKL 283
Query: 235 WGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCE 292
W K+W L ++P K +WR+L N +P + L RG+ C C+ + E +H+ + C
Sbjct: 284 WKKIWNLHTIPRHKTILWRILNNSIPLRSELGKRGVLCSPLCPRCETKIETTDHIFMHCP 343
Query: 293 RARSVWRR 300
+W R
Sbjct: 344 NISKIWFR 351
>IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
3889810-3888042 H EGN_Mt090430 20090702
Length = 489
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 144/294 (48%), Gaps = 41/294 (13%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +F LP +L + + N FWWG + + I+WLSW+++ K GGM F++L FN+
Sbjct: 14 MSLFQLPTTLITTIERMMNSFWWGHDRSTHQSINWLSWEKLSMHKSHGGMGFKDLSAFNL 73
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQGW+ L++T++L +T +++ R
Sbjct: 74 AMLGKQGWKFLSDTNSL-------------------------------VTPRFIVRGRAR 102
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSS---IDPDFRVQNLFCHEGKRWDIDKIMNL 177
W + + ++ P + S DGS + DF+VQ+L GKR ++ + +
Sbjct: 103 WSISSGVSLPILDAPLLSNGESI---DGSITEGFYVRDFKVQSLISEHGKRRNVPLVRQV 159
Query: 178 FCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMAL-KVFGKEPERRDGEIWG 236
F + V AI+ PL D L+W +R G Y+V+S+Y + + K+ R G W
Sbjct: 160 FSNDIVDAILNTPLYDQVHQDRLIWKAERNGCYTVRSAYRLCVEKLMDVSYLHRPGS-WN 218
Query: 237 KLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGE-QEINHVL 288
+WRL VPP VK+ + R+ R +PT+ RL+++G+ C CD I H+L
Sbjct: 219 NIWRLKVPPKVKNLLVRMCRGCLPTRARLQDKGVSCPTNCGSCDSTVNSIFHML 272
>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
EGN_Mt090430 20090702
Length = 612
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 17/306 (5%)
Query: 5 LLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSF---RNLHFFN-- 59
++PL L + + TN G++ G G +L M GR K+ F R H N
Sbjct: 47 VVPLPLKETI---TNIL--GVRAVMGTG-KYLGLPSMVGRSKEATFGFIKDRIWHKINSW 100
Query: 60 ----VAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLL 115
++ ++GWR TE+ L R+FKA++F DF+ + +G NP +V ++I ++ ++
Sbjct: 101 SSKCLSKAGREGWRFQTESTNLVCRLFKARYFPNSDFIGSKIGHNPSYVWRSIFSAKIVV 160
Query: 116 KHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIM 175
K G RWR+ +I + PW+ S I + ++ + + K W I
Sbjct: 161 KQGARWRIGSGVNIPFLGAPWLKDGLSLSITNPIFEPLMQVKLCDFIEQDVKMWKAPLIH 220
Query: 176 NLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIW 235
+LF A I+ PL D ++W ++ G YS+KS+Y + + W
Sbjct: 221 SLFDAQTAELILNTPLQPLVLEDKMIWKGEKNGTYSLKSAYRICVTEIADNSHMHVNGRW 280
Query: 236 GKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCER 293
+W+L VPP +K F+WRV R PT+ RL +RG+ C C+ E + H+L+ C +
Sbjct: 281 NLIWKLKVPPKIKKFLWRVCRGCFPTRARLNSRGVSCPLDCVHCNHNYEDSIHILIECPK 340
Query: 294 ARSVWR 299
VWR
Sbjct: 341 VVQVWR 346
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 82/354 (23%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M ++LLP S+ D++ K N FWWG + +GI W++W+ M K+ GGM FRN FN+
Sbjct: 185 MSIYLLPSSVIDDIEKMVNAFWWG-GRSNNRGIKWMAWEHMACPKEFGGMGFRNFKAFNI 243
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AM+ KQGW LL+ ++L R+FK+++F R FL A L
Sbjct: 244 AMVAKQGWSLLSTPESLVARVFKSRYFPRSSFLGAKL----------------------- 280
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
V + + ++V+ PW+ I+ S V +L E + WD+DKI +LF
Sbjct: 281 --VGNGQQVSVMNDPWVRGVQGSCIQSPQSQGVHILSVSDLIADEDRVWDVDKIESLFPD 338
Query: 181 NDVRAIVGIPL-----------------------------------------------SI 193
+ V+AI+ PL +I
Sbjct: 339 DMVQAILDTPLFAEVHNDRITWMVECNGSCYILIGSMLKKSVWDVDKIESLFPDDMVQAI 398
Query: 194 FNSP-------DVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRL-SVPP 245
++P D + W + G Y++ + Y +A+ E W ++W++ S
Sbjct: 399 LDTPLFAEVHNDRITWMVECNGRYTINTGYKIAMMELLHTDRFHVEEEWKRIWKVNSHHK 458
Query: 246 VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
++ +WR+ R VPT+ RL++R + + C CD E + H V C A W
Sbjct: 459 ARNLLWRICRGCVPTRLRLQSRHVQCEVICPSCDTVVEDDWHAFVGCTVACESW 512
>IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
12035165-12036141 H EGN_Mt090430 20090702
Length = 250
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 44 RKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIF 103
RK+ GGM FR+ FN+AML KQGW+LLT DT+ RI+KAK++ FL A LG N +
Sbjct: 2 RKEYGGMGFRHFFGFNLAMLGKQGWKLLTNQDTIVARIYKAKYYPNTYFLGARLGHNQSY 61
Query: 104 V*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFC 163
+ ++I L++ G RWR+ + ++I V PW+ + + V+ + +V +L
Sbjct: 62 IWRSIFALQVLVRGGQRWRIGNGKNIAVWTDPWLREDKNSVVSSTRVQGTENLKVADLMD 121
Query: 164 HEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVF 223
G W+ I LF D AI + L+ D +W + +G Y+VKS+Y A++
Sbjct: 122 SNGVTWNWGLIAALFNEQDKAAIAKLALTNREGEDKRIWKFNSQGFYTVKSAYRYAMETL 181
Query: 224 GKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRN 256
E R W K+ ++ +P +K F+WRVLR+
Sbjct: 182 IDNEEYRVPREWLKMLKMQIPQRIKVFLWRVLRD 215
>IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
7642559-7645649 E EGN_Mt090430 20090702
Length = 541
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 9/282 (3%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L +++ K FWWG D + IHW + + + GGM F+ L FN+
Sbjct: 53 MSCFLLPKGLCEKIEKAVCAFWWG-GSDSKRKIHWTKKENLFKPRHKGGMGFKILRDFNM 111
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ WR T +L R+FKAK+F D L +LG N + ++I S +++ G
Sbjct: 112 AMLAKQVWRFQTNQKSLISRVFKAKYFPYQDILQTNLGYNLSYAWRSIFHSIWVIQKGSC 171
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
W++ + + + + + WIP + I + V++L + W+ + F +
Sbjct: 172 WKIGNGQKVRIWEDNWIPTHQNLRIFTPNMGNPDVVLVKDLINTDEPSWNNSILNTHFLS 231
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFG----KEPERRDGE--I 234
D I IPL + D ++WH+ + G Y+V+S Y A++ + EP + E +
Sbjct: 232 IDKDQIECIPLINLANDDEIIWHFNQDGNYTVRSGY-QAIQNWKITTISEPSNSNIETNL 290
Query: 235 WGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKC 275
W KLW + ++P K +WRVL N +P + L RG+ + C
Sbjct: 291 WKKLWTIHTIPRHKMILWRVLNNTLPLRSELGKRGILCNPLC 332
>IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
26300425-26300964 H EGN_Mt090430 20090702
Length = 179
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M ++LLP S+ D++ K N FWWG + + +GI W++W+R+ K+ GGM FRN FN+
Sbjct: 14 MSIYLLPNSVIDDIEKMINAFWWGGRSNN-RGIKWMAWERVACPKEFGGMRFRNFKAFNI 72
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AM+ KQGW L++ D+L RIFK+++F R FL A LG+NP F ++I S +LL +G R
Sbjct: 73 AMVAKQGWSFLSKPDSLVARIFKSRYFPRSSFLGAKLGNNPSFAWRSIWNSCQLLLYGCR 132
Query: 121 WRVEDERDINVVKKPWI 137
W + D + ++V+ PW+
Sbjct: 133 WTIGDGQQVSVMNDPWV 149
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 23/303 (7%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP D + + KFWWG D K IHW+ D++ DGG+ FRNL FN+
Sbjct: 210 MSCFLLPQETCDNIERAVCKFWWGSNGDNKK-IHWVKKDKVLRSTIDGGLGFRNLRDFNM 268
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
ML KQ WRL T L ++FKAK++ D L A++G P + ++ + +L G
Sbjct: 269 VMLAKQIWRLHTNQQALISKVFKAKYYPTTDVLQATVGYAPSYAWRSFHQAIWILNKGCC 328
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
+V + I++ K W+ + F + + +D RVQ+L +RW+ D I ++F
Sbjct: 329 MKVGNGASIDIWKDQWLHNQIGFKVLTHNPGVDNVERVQDLIIDNPQRWNKDLIEHIF-- 386
Query: 181 NDVRAIVGIPLSIFNS---PDVLVWHYKRRGIYSVKSSYF---MALKVFGKEPERRDGEI 234
+ + +FN P I +++++ L FG+ P +
Sbjct: 387 -----LFFLKEPLFNKSLLPSTKARTLSCGCIMNLENTLLKRATLLSRFGR-PNKT---- 436
Query: 235 WGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFC-DGEQEINHVLVTCE 292
K+W L ++P + +WR++ +P ++ L RG++ C C +G + I+H+ + C+
Sbjct: 437 --KIWSLDTIPRHRVLLWRIINKALPVREELHKRGINCSLLCPRCEEGIETIDHLFLNCD 494
Query: 293 RAR 295
+R
Sbjct: 495 CSR 497
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M ++L+P S+ D++ K N FWWG + +GI W++W+RM K+ GGM F N FN+
Sbjct: 286 MSIYLMPSSVIDDIEKMINAFWWG-GRSNNRGIKWMAWERMACPKEFGGMGFMNFKAFNI 344
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AM+ KQGW L++ ++L R+F+A++F R FL A LG+N F ++I S ++L HG R
Sbjct: 345 AMVAKQGWSFLSKLESLVARVFEARYFPRSSFLGAKLGNNLSFAWRSIWNSRQILLHGCR 404
Query: 121 WRVEDERDINVVKKPWI 137
W V + + ++V+ PW+
Sbjct: 405 WTVGNGQQVSVMNDPWV 421
>IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6753317-6752601 H EGN_Mt090430 20090702
Length = 238
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 1/183 (0%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +FL+P SL DE+ K N FWWG + KGI WLSW ++ K+ GGM F+NL+ FN+
Sbjct: 50 MSIFLIPSSLGDEIEKMMNSFWWGNGGNRNKGIRWLSWYKLYVHKRSGGMGFKNLYMFNM 109
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
A+L KQ WRL+ + + L R+FKA+++ R D A G+N +V K+I + ++K G R
Sbjct: 110 ALLGKQVWRLMCQPELLIARLFKARYYQRNDIFEAKKGNNSSYVWKSIHEAIPMVKQGTR 169
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
W++ + I V + W+ + V+ L K WD+D + +
Sbjct: 170 WKIGKKDKIRVFQDRWL-MNGGLAQPAAQYNQLLQLNVKELLQPGQKSWDLDVLQHYLTP 228
Query: 181 NDV 183
+ V
Sbjct: 229 HSV 231
>IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34195188-34196556 H EGN_Mt090430 20090702
Length = 307
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 89/138 (64%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M VFLLP +L D++ K N FWWG +GIHWLS +++ K GGM F++L FN+
Sbjct: 1 MSVFLLPTTLVDQIEKMINGFWWGNGGSNRRGIHWLSCNKLRVHKNHGGMGFKDLTAFNL 60
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQGW+ +++ L ++FKA++F + D+L A LG N FV ++I ++ ++ + GVR
Sbjct: 61 AMLGKQGWKFQFQSECLVSKLFKARYFPQSDYLGAKLGHNLSFVWRSIYSARRVARSGVR 120
Query: 121 WRVEDERDINVVKKPWIP 138
W++ + +I + PW+
Sbjct: 121 WKIGNSVNIPIFDAPWLA 138
>IMGA|Medtr1g117580.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 25273871-25275952 H
EGN_Mt090430 20090702
Length = 663
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
Query: 45 KKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV 104
+G MSF++L FN+AML KQGWR+LT DTL +I+KA++FSR +FL A++G P FV
Sbjct: 474 STNGSMSFKSLGTFNLAMLGKQGWRILTNPDTLIAKIYKARYFSRCNFLEATIGHKPSFV 533
Query: 105 *KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRESS-FVIEDGSSSIDPDFRVQNLFC 163
++I S +LK G RW++ + I V W+ + + +ED +S++ + RV +
Sbjct: 534 WRSICNSKFILKAGSRWKIGNGTSIPVWNNYWMKDNVTLYPLEDVASTL-ANLRVSDCIL 592
Query: 164 HEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALK 221
K W++ + ++F V I+ PL D L+W + G YSV+S+Y + +
Sbjct: 593 PNHKSWNLPFLHSVFNHQVVEHIINTPLFPSVHEDRLIWKKENNGEYSVRSAYHLCMN 650
>IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
3397609-3394716 E EGN_Mt090430 20090702
Length = 703
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 21 FWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYR 80
F WG ++ + IHW S + + K +GG FR +H FN A+ KQ WRL+ + TL +
Sbjct: 464 FGWGGSEEKRR-IHWKSKEVLFKSKFNGGQGFRTMHHFNEALFAKQAWRLIHQPQTLISK 522
Query: 81 IFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRE 140
KAK++ D L A G NP FV +I + +++ G W++ + +NV + WIP+
Sbjct: 523 CLKAKYYPHTDLLRARRGRNPSFVWSSIHHAEWVIQKGGCWKIGNGSQVNVWEDNWIPQH 582
Query: 141 SSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVL 200
+ F I ++ +V+ L + + W + N F + + I +PL D
Sbjct: 583 NGFKIYTPGANSSSIRQVKELLVEDPRGWHQSILENHFLSFESERIQQLPLVQEVLEDSY 642
Query: 201 VWHYKRRGIYSVKSSYFMALK-----VFGKEPERRDGEIWGKLWRL-SVPPVKDFV 250
+W Y + G Y+VKS Y + + G + IW W L ++P KD +
Sbjct: 643 MWMYSQDGNYTVKSGYNFIKEWHYNSLPGPSNNNNNQRIWKASWNLDTIPRHKDLL 698
>IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26788772-26788104 H EGN_Mt090430 20090702
Length = 222
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 105/220 (47%), Gaps = 6/220 (2%)
Query: 62 MLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRW 121
ML KQ WR T+ +L R FKAK+F + D L A LG NP + ++I S ++ G W
Sbjct: 1 MLAKQVWRFHTKPHSLISRCFKAKYFPQSDILQAPLGCNPSYAWRSIHNSIWVILKGSCW 60
Query: 122 RVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCAN 181
++ + V W+P + F I V++L + WD + + NLF
Sbjct: 61 KIGNGESAKVWGDNWVPLHNGFKILTQKMEPFSIRHVKDLINMDSFSWDTEILNNLFLPI 120
Query: 182 DVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSY-----FMALKVFGKEPERRDGEIWG 236
D I IP+ + D +W ++ G+Y+VKS Y + + D ++W
Sbjct: 121 DKDHIEQIPIINTTNIDEYMWMHEPTGVYTVKSGYKAIKEWQDQQFSSTASSSCDTQVWK 180
Query: 237 KLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKC 275
KLW + ++P K +WR+L+N +P + L NRG+ C
Sbjct: 181 KLWAIHTIPRHKVLLWRILQNSLPVRSELSNRGVPCSILC 220
>IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
4206337-4207793 E EGN_Mt090430 20090702
Length = 357
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +FL+P + D++ + +FWWG +D + IHW + D + K GG FR + FN
Sbjct: 171 MSMFLIPEGICDKIEQAICRFWWGGNEDRRR-IHWKNKDFLFKPKFSGGQGFRTMRSFNE 229
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
A+L KQ WRL+ + KAKHF D L A LG+ P FV +I + ++K G R
Sbjct: 230 ALLAKQVWRLIKYPTSFLATCLKAKHFPNTDVLKAKLGNQPSFVWSSIYHTKWIIKKGGR 289
Query: 121 WRVEDERDINVVKKPWIPRESSF-VIEDGSSSID 153
W + D + I+V W+P ++ F + +++ID
Sbjct: 290 WLIGDGKKIDVWDDNWLPHQNGFKTVSKPTNNID 323
>IMGA|Medtr4g084240.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr04_pseudomolecule_IMGAG_V3
17645335-17644567 H EGN_Mt090430 20090702
Length = 185
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 72/253 (28%)
Query: 19 NKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLF 78
N FWWG +GI WLSW ++ K G+ F +L FN+AML KQGW+ T ++LF
Sbjct: 3 NFFWWGHGGANNRGISWLSWKKLLMHKVHAGVGFIDLPAFNLAMLAKQGWKFQTNPESLF 62
Query: 79 YRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIP 138
L A LG NP +V NIL + ++++ VRWR
Sbjct: 63 --------------LTARLGDNPSYVWDNILQACLIVRNEVRWR---------------- 92
Query: 139 RESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPD 198
S I D ++N N V + D
Sbjct: 93 ----------SKDIAYD------------------VLNTSLVNQV------------TND 112
Query: 199 VLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP--VKDFVWRVLRN 256
L+W ++ GIYSVKS++ + ++ R E W +WRL VPP K V +L
Sbjct: 113 KLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRLKVPPKIKKSHVDDMLDE 172
Query: 257 VVPTKDRLRNRGL 269
++PT+ +L+++G+
Sbjct: 173 ILPTRMQLKDKGV 185
>IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
10317892-10316821 H EGN_Mt090430 20090702
Length = 341
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 39/260 (15%)
Query: 50 MSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNIL 109
M + L FN+AML KQG R+ ++ K+ +F R +FL A +G NP F ++I
Sbjct: 1 MGVKTLKDFNLAMLAKQGLRIFHHGESFLTTCLKSHYFPRCNFLQAGIGFNPGFTWRSI- 59
Query: 110 TSSKLLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRW 169
V+ R+ED W+P + + S V L E RW
Sbjct: 60 ---------VQARLED---------IWLPHQYGHKLWSPKPSGSNIHLVAELIHEECGRW 101
Query: 170 DIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYS---------VKSSYFMAL 220
+ + F + I+ IP+ D +W + ++ + S+Y
Sbjct: 102 NAHLVNEFFLPFKAQQILQIPVFPSQQQDCFIWAVNKNDEFTEFLKERRERLNSNY---- 157
Query: 221 KVFGKEPERRDGEIWGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCD 279
++G +W KLWR+ ++P +W +L N +P + L NRG+ C CD
Sbjct: 158 ----SHSSLQNG-VWNKLWRVKTIPRHTHLIWCILHNWLPVRSALFNRGVQCSPLCCLCD 212
Query: 280 GEQE-INHVLVTCERARSVW 298
+QE INH+ + C +++VW
Sbjct: 213 QQQESINHLFMECGWSKAVW 232
>IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 40910518-40909919 H
EGN_Mt090430 20090702
Length = 199
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L +++ + FWWG + K IHW + + + K DGGM F++L FN+
Sbjct: 37 MSCFLLPKGLCEKIERVVCSFWWG-STNTKKKIHWKNKEILFKFKHDGGMVFKSLRDFNI 95
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ WR T +TL + FK+K++ D L A LG+NP + ++I + + G
Sbjct: 96 AMLAKQVWRFHTNLNTLIAKCFKSKYYPHTDILEADLGNNPNYAWRSIQNAIWPILKGSC 155
Query: 121 WRVEDERDINVVKKPWIPRESSF 143
WRV +I + WIP S
Sbjct: 156 WRVGKGDNIRIWDDNWIPTYHSL 178
>IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
31059249-31058149 H EGN_Mt090430 20090702
Length = 344
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 2/187 (1%)
Query: 114 LLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
+L G RWR+ D I V+ PW+ E + + D + +L GK WD+DK
Sbjct: 2 VLLRGCRWRIGDGTQIRVMHDPWLRNEHGGWLASPQNQDVYDLFLADLMIEGGKEWDVDK 61
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGE 233
I +L +++ PL D ++W ++ G+YSVK+ Y + + + +
Sbjct: 62 IFDLLSFESANSVLKTPLFPSVQDDQVIWQEEQNGVYSVKTGYRIDARDVVPASQYQVRG 121
Query: 234 IWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTC 291
W KLW++ PP ++ +WR+ +PT+ +L +R + C +C E E + H + C
Sbjct: 122 DWNKLWKVCSPPKARNLLWRICPGCIPTRVKLVHRQVPCAYLCPWCGLEAETDWHAFIGC 181
Query: 292 ERARSVW 298
A+ W
Sbjct: 182 TIAKESW 188
>IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
31944726-31943241 H EGN_Mt090430 20090702
Length = 351
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L D + + FWWG D + IHW D + K GG F+NL FN+
Sbjct: 1 MSCFLLPQGLCDRIERVVCSFWWG-GSDSNRKIHWTKNDSLFQSKDSGGFGFKNLRDFNL 59
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
ML KQ WR T+ S L K G
Sbjct: 60 DMLAKQAWRFYTQ------------------------------------PHSNLQKGGC- 82
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSI-DPDFR-VQNLFCHEGKRWDIDKIMNLF 178
WR+ + I + + WIP + F + S +I +P+ + V++LF +G WD D I N F
Sbjct: 83 WRIGNGHSIKIWEDNWIPSNNDF--KTISPNIGNPNIQLVKDLFLQDGSGWDTDLIKNNF 140
Query: 179 CANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSY 216
D I IP+ + D +W +++ G+YSVK+ Y
Sbjct: 141 LHIDRDNITQIPIINTSKNDEYMWMHEQNGVYSVKNGY 178
>IMGA|Medtr3g024330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
5982582-5983034 H EGN_Mt090430 20090702
Length = 150
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 61/93 (65%)
Query: 3 VFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAM 62
+FL+P SL DE+ K N FWW + KGI WLSWD++ K+ GM F+NL+ FN+A+
Sbjct: 16 IFLIPSSLGDEIEKIMNYFWWENGGNRNKGIRWLSWDKLYVHKRSRGMGFKNLYMFNMAL 75
Query: 63 LEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNA 95
+KQ WRL+ + + L R+FKA+++ R D A
Sbjct: 76 HDKQVWRLMCQPELLVARLFKARYYRRNDIFEA 108
>IMGA|Medtr7g084960.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
18459835-18459356 H EGN_Mt090430 20090702
Length = 144
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 15/158 (9%)
Query: 44 RKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIF 103
DGGMSF+NL FN+AML KQGWRL+ D+L R++KAK++ R +F ++LG P F
Sbjct: 2 HNSDGGMSFKNLPTFNLAMLGKQGWRLMINPDSLVARLYKAKYYPRCNFFESTLGHKPSF 61
Query: 104 V*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFC 163
V ++I D DI+V WI + + + D RV +
Sbjct: 62 VWRSIC---------------DGEDISVWYNKWIANDVTLIPHANGHFPLADLRVSDCML 106
Query: 164 HEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLV 201
H+ K W++ + ++F + V IV PL + D L+
Sbjct: 107 HDRKEWNLPFLQSIFDHHVVENIVNTPLYPSVTEDRLI 144
>IMGA|AC146793_2.1 RNA-directed DNA polymerase, related AC146793.7
10132-10811 E EGN_Mt090430 20090702
Length = 170
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 36 LSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNA 95
+S +++ GGM F++L F +AML KQGWR T+ +L R+FKA++FS F+ +
Sbjct: 1 MSLEKLSVHNCFGGMRFKDLTSFIMAMLGKQGWRFQTDPTSLVSRLFKARYFSNSSFIQS 60
Query: 96 SLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPD 155
S+G NP +V ++I ++ ++KH W V +I + PW ++DG S +
Sbjct: 61 SIGHNPSYVYRSIFSAKIMVKHDALWPVGSGANIPFLGAPW--------LKDGLSLSTTN 112
Query: 156 FRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSS 215
+ LF I+ PL + D L+W + G Y V+S+
Sbjct: 113 SIFEPLFAQR--------------------ILNTPLQHLVTEDKLIWKGDKSGKYFVRSA 152
Query: 216 Y 216
Y
Sbjct: 153 Y 153
>IMGA|Medtr3g103220.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
25344775-25343668 H EGN_Mt090430 20090702
Length = 206
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 29/137 (21%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M VFLLP ++ +E+ F+WGLKK+GG+ I+ L WD M K GG+ FR+L +N+
Sbjct: 36 MSVFLLPTTIREEIEHVMKSFYWGLKKNGGRSINRLKWDNMTPCKDHGGLKFRDLEGYNL 95
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ +LLT+ +L + AK+ IF KN R
Sbjct: 96 AMLVKQKLKLLTKFPSLLTKAPNAKY---------------IF--KN------------R 126
Query: 121 WRVEDERDINVVKKPWI 137
WR+ D +INV PWI
Sbjct: 127 WRIGDGNNINVWTYPWI 143
>IMGA|AC233662_12.1 Lipocalin AC233662.1 48072-47128 H EGN_Mt090430
20090702
Length = 275
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 167 KRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKE 226
KR+ + I+ F + +AI + L + D L+W + R IY+V+S+Y A+K
Sbjct: 3 KRYSLHPIIIEFFTHFRKAISNLALLNRDGKDRLIWKFNRHEIYTVRSAYRYAMKTLVDN 62
Query: 227 PERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN 285
E R W K+W L +P VK F+WR +R V PT+ R++++G+ C FC+ E +
Sbjct: 63 VEYRILGEWLKMWSLKIPQRVKVFLWRAVRGVFPTRMRMQDKGVPCTDCCPFCETNYEND 122
Query: 286 -HVLVTCERARSVWR 299
HV + CE +++WR
Sbjct: 123 WHVFMGCEEVKTIWR 137
>IMGA|AC233657_3.1 Lipocalin AC233657.1 16055-16999 H EGN_Mt090430
20090702
Length = 275
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 167 KRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKE 226
KR+ + I+ F + +AI + L + D L+W + R IY+V+S+Y A+K
Sbjct: 3 KRYSLHPIIIEFFTHFRKAISNLALLNRDGKDRLIWKFNRHEIYTVRSAYRYAMKTLVDN 62
Query: 227 PERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN 285
E R W K+W L +P VK F+WR +R V PT+ R++++G+ C FC+ E +
Sbjct: 63 VEYRILGEWLKMWSLKIPQRVKVFLWRAVRGVFPTRMRMQDKGVPCTDCCPFCETNYEND 122
Query: 286 -HVLVTCERARSVWR 299
HV + CE +++WR
Sbjct: 123 WHVFMGCEEVKTIWR 137
>IMGA|Medtr8g105650.1 reverse transcriptase, putative;
100033-105622, related chr08_pseudomolecule_IMGAG_V3
23385469-23384651 H EGN_Mt090430 20090702
Length = 244
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 29/216 (13%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L +++ K FWWG D K IHW + + + GGM F+ L FN+
Sbjct: 53 MSCFLLPKGLCEKIEKVVCAFWWG-GTDSKKKIHWTKRENLFKPRHKGGMGFKILRDFNM 111
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
AML KQ A+LG +P + ++I S +++ G
Sbjct: 112 AMLAKQ----------------------------ANLGYSPSYAWRSIFHSIWVIQKGSC 143
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
W++ + + + + + WIP +F I + V++L + W+ + F +
Sbjct: 144 WKIGNGQKVRIWEDNWIPTHHNFRIFTPNLGNPDVVLVKDLTNMDEPSWNNSILNTHFLS 203
Query: 181 NDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSY 216
D I IPL + D ++WH+ + G Y+V S Y
Sbjct: 204 IDKDQIECIPLINLANDDEIMWHFNQDGKYTVHSGY 239
>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
EGN_Mt090430 20090702
Length = 404
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 114 LLKHGVRWRVEDERDINVVKKPWIP---RESSFVIEDGSSSIDPDFRVQNLFCHEGKRWD 170
+++HG RW + DI+++ +PWI R +D S + V +L + K W+
Sbjct: 2 VVRHGTRWIIGSGYDISMINEPWIGMGLRVPPAAPDDLSYQ---GYSVGHLIHQDVKTWN 58
Query: 171 IDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERR 230
++ +F A + I+ PL + + D LVW ++ G YSV+S+Y + ++
Sbjct: 59 EPLVICIFEAGTAQQILNTPLFLQVNEDKLVWKPEKNGQYSVRSAYRVCVEEIADMSHLH 118
Query: 231 DGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTK 261
WG +W+L VPP VK+ +WRV R +PT+
Sbjct: 119 TNGFWGGIWKLKVPPKVKNMLWRVCRECLPTR 150
>IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3
22005738-22006807 E EGN_Mt090430 20090702
Length = 168
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 114 LLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
+++ G RWR+ + + I V PW+ RE D +V +L G+ W+
Sbjct: 4 IVRGGQRWRIGNGKSIAVWTDPWL-RE--------------DEKVADLM--SGESWNWGM 46
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGE 233
I +F +D +AI + L + D ++W + R G Y+V+S+Y A++ E R
Sbjct: 47 IAGIFNDHDRKAISNLALLNRDGEDRIIWKFNRYGNYTVRSAYRYAMETLVDNVEYRVSG 106
Query: 234 IWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTC 291
W K+W L +P +K F+WR +R +PT+ RL+++ + C FC+ E N HV +
Sbjct: 107 EWLKMWSLKIPQRIKVFLWRAVRGALPTRMRLQDKVVPCTDCCPFCETNYENNWHVFMGV 166
Query: 292 ER 293
++
Sbjct: 167 KK 168
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 5 LLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSF---RNLHFFN-- 59
++PL L + + TN G++ G G +L M GR K+ F R H N
Sbjct: 401 VVPLPLKETI---TNIL--GVRAVMGTG-KYLGLPSMVGRSKEATFGFIKDRIWHKINSW 454
Query: 60 ----VAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLL 115
++ + ++GWR TE+ L R+FKA++F DF+ + +G NP +V ++I ++ ++
Sbjct: 455 SSKCLSKVGREGWRFQTESSNLVCRLFKARYFPNSDFIGSKIGHNPSYVWRSIFSAKIVV 514
Query: 116 KHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQ--NLFCHEGKRWDIDK 173
K G RWR+ +I + PW+ + + + +P +V+ + + K W
Sbjct: 515 KQGARWRIGSGVNIPFLGAPWL--KDGLFLSTTNPIFEPLMQVKLCDFIEQDVKMWKAPL 572
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRG 208
I +LF A I+ PL D ++W ++ G
Sbjct: 573 IHSLFDAQTAELILNTPLQPLVLEDKMIWKGEKSG 607
>IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V3
16870634-16874775 H EGN_Mt090430 20090702
Length = 651
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 19/303 (6%)
Query: 4 FLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAML 63
FL P + S+ + F WG + +H SW +C K G+ R N+ +
Sbjct: 24 FLCPRNCSNRGFR---GFIWG-DTPSHRHVHLASWASICTPKSYAGLGLRTACDMNLTAM 79
Query: 64 EKQGWRLLTETDTLFYRIFKAKHFSRVDFL----NASLGSNPIFV*KNILTSSKLLKHGV 119
K GW L + D + +I KAK+ D + GSN + + I + + + +
Sbjct: 80 MKVGWSLSHKKDAFWVKIIKAKYRCGNDIMPRIQTNKAGSN---LWRGICRNWEKVTPNL 136
Query: 120 RWRVEDERDINVVKKPWIPRESSFVIEDG-SSSIDPDFRVQNLFCHEGKRWDIDKIMNLF 178
WRV +IN W+P +ID D F ++ W++ ++NL
Sbjct: 137 IWRVGQGDNINFWSDMWVPGAGPLSCHTNLPITIDDDMLTVKEFANDAGDWNLSLLVNLL 196
Query: 179 CANDVRAIVGIPLSIFN-SPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGK 237
+ I +P S D L W G +S +Y L + + ++
Sbjct: 197 PPWIIEQIRSLPAPHSEASVDSLAWEGSLDGEFSHALAYESILSL----TPSNNSNLYKC 252
Query: 238 LWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERAR 295
+W+ P +K +W+V R ++ T +RG+ + +C C+ E E I H + C A+
Sbjct: 253 IWKWQGPERIKFLLWKVARKILLTNLTRNSRGMAPNDRCSICNSEPESIIHTIRECHLAK 312
Query: 296 SVW 298
+ W
Sbjct: 313 ATW 315
>IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 17721962-17723166 E
EGN_Mt090430 20090702
Length = 188
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP + +L + FWWG D K HW+ W+++C KK+GG+ FRNL FN+
Sbjct: 108 MSGFLLPKNFCQQLDRVICDFWWGSNTDS-KRTHWIKWEKLCKAKKNGGLGFRNLRAFNI 166
Query: 61 AMLEKQGWRLLTETDTLFYRIF 82
A+L KQ WR+ T+ +L ++
Sbjct: 167 ALLAKQIWRIQTQNQSLMAKVL 188
>IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
17724162-17724986 H EGN_Mt090430 20090702
Length = 274
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 10/227 (4%)
Query: 81 IFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPWIPRE 140
+ KAKHF A + ++ L + +++ G W V + IN+ + W+P +
Sbjct: 1 MLKAKHFPNNTIWEAHQKPGISYSWRSFLQARWVIQKGSYWTVGNGNLINIWEDRWLPDQ 60
Query: 141 SSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVL 200
+ F + + +V +L + W+ I LF + I IPL N D L
Sbjct: 61 NGFKVFSKKPNNCDIQKVSDLIDYTTLSWNTPLIHKLFLPFETDQIHQIPLINTNEDDDL 120
Query: 201 VWHYKRRGIYSVKSSYFMALKVFGKEPERRDGE-------IWGKLWRLSVPPVK-DFVWR 252
VW + G YSVK Y +K ++ + + G I LW ++P K +WR
Sbjct: 121 VWAHTNNGSYSVKYGYHF-IKNREEQAQGQPGNSSTCCDPISKNLWNQTIPQNKIQLIWR 179
Query: 253 VLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVW 298
++ N +P K L G+ D C C E I+H + C + VW
Sbjct: 180 IMNNGLPVKRNLMQCGIRCDPLCPGCGNHIESISHTFMQCSWVQRVW 226
>IMGA|Medtr5g021560.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
8248910-8249829 H EGN_Mt090430 20090702
Length = 241
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 71 LTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDIN 130
+++ ++L R+FK+++F +L LG NP F ++I S +LL +G R + + + ++
Sbjct: 1 MSKPESLVVRVFKSRYFPHSSYLGPKLGYNPNFAWRSIWNSRQLLLYGCRCTIGNGQQVS 60
Query: 131 VVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIP 190
V+ PW+ I+ S RV +L E + WDIDK+ +LF + V+AI+ P
Sbjct: 61 VMNDPWVRGTREKWIQSPQSQGVRSLRVSDLIVDEERVWDIDKLESLFPDDMVQAILDTP 120
Query: 191 LSIFNSPDVLVWHYKRRG 208
L D + W +R G
Sbjct: 121 LFAEVHNDRIAWMKERSG 138
>IMGA|Medtr5g073410.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
26368918-26367637 H EGN_Mt090430 20090702
Length = 409
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 114 LLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
+++ G RW++ + +I + + PW+ SS + + RV +L W+ +
Sbjct: 2 IVRSGARWKIGNNINIPMFEAPWLRNGGVISGVGQSSDVLQNVRVHSLIDQNTNGWNYNM 61
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGE 233
+ F + V+ I+ P+ D L+W ++ G YSVK FG
Sbjct: 62 VNYYFDYDTVQEIIRTPIFHQVEEDALIWKAEKNGHYSVKRQAVGI--AFGDSK------ 113
Query: 234 IWGKLWRLSVP-PVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFC-DGEQEINHVLVTC 291
VP V +F+WRV R+ +PT+ RL ++G++ C C + ++ HVL C
Sbjct: 114 ---------VPLKVNNFLWRVCRDCLPTQARLLDKGVNCTYLCGLCEECYEDTTHVLFDC 164
Query: 292 ERARSVW 298
+AR+VW
Sbjct: 165 PKARNVW 171
>IMGA|Medtr4g107070.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr04_pseudomolecule_IMGAG_V3
23293240-23293037 H EGN_Mt090430 20090702
Length = 67
Score = 74.3 bits (181), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +F+LP SL D K N FW+G + G+HW+SWD++ K GGM F++L +FN+
Sbjct: 1 MSIFILPTSLIDATEKMLNGFWYGHGRLLNMGMHWMSWDKLTIHKNHGGMGFKDLKYFNI 60
Query: 61 AMLEKQG 67
AML KQG
Sbjct: 61 AMLRKQG 67
>IMGA|Medtr7g068050.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 13863114-13862631 H
EGN_Mt090430 20090702
Length = 114
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 14/107 (13%)
Query: 31 KGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRV 90
KGI WLSWD++ K++GGM F+NL+ FN+A+L Q WRL+++ + +
Sbjct: 12 KGIRWLSWDKLFVHKRNGGMGFKNLYLFNMALLGNQVWRLMSQPENAIFE---------- 61
Query: 91 DFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPWI 137
A+ G+N +V K+I + ++K G RW++ + I V + W+
Sbjct: 62 ----ANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWL 104
>IMGA|Medtr1g147120.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr01_pseudomolecule_IMGAG_V3
32701852-32701244 H EGN_Mt090430 20090702
Length = 202
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 180 ANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLW 239
D I +PL D ++W+ G Y++KS+Y M + + + W +W
Sbjct: 3 TQDTSDICRLPLHSRTHSDTIIWNASPNGSYTIKSAYKMCVSISDQRSNYHVSGDWKLIW 62
Query: 240 RLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFC--DGEQEINHVLVTCERARS 296
L V P +K F WR+LR +PT+ L++ G+ C C D E E+ H+ + C+ A
Sbjct: 63 SLCVAPKIKHFCWRLLRGCLPTRSNLQSCGVHCQSTCVVCNRDLEDEM-HMFMHCKFATD 121
Query: 297 VWR 299
W+
Sbjct: 122 CWK 124
>IMGA|Medtr1g089830.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr01_pseudomolecule_IMGAG_V3
18011505-18012272 H EGN_Mt090430 20090702
Length = 179
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 177 LFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWG 236
L C + + + + + +F ++L+W+ ++ G YSV+S+Y + +
Sbjct: 19 LECFHLLTPTLSLAVILFCIRNMLIWNTEKNGNYSVRSAYRICVTKIADNTHLHVSVDGN 78
Query: 237 KLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERA 294
W+L VPP VK+FVWRV R PT+ RL + G+ C CD E + HVLV C +
Sbjct: 79 LSWKLKVPPKVKNFVWRVRRGCFPTRARLSSGGVAYPIDCVTCDSNYEDSIHVLVECPKV 138
Query: 295 RSVWR 299
VWR
Sbjct: 139 VQVWR 143
>IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34427458-34427919 H EGN_Mt090430 20090702
Length = 153
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 114 LLKHGVRWRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
++K G RWR+ I ++ PW+ S +++ + +V N+ K W+
Sbjct: 2 MVKQGARWRIGSGDTIPLLDAPWLKDGRSLTMDNPMYAPLSHVKVPNIIEPSTKVWNTTL 61
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGE 233
I N+F N + I+ PL D L W ++ G YSV S+Y + + +
Sbjct: 62 ISNMFNHNTTQLILNTPLQPLVHEDKLTWKAEKNGNYSVSSAYRICVTEIADKSHLHIPA 121
Query: 234 IWGKLWRLSVPP-VKDFVWRV 253
W +L VPP +++FVWRV
Sbjct: 122 RWNLTRKLKVPPMIRNFVWRV 142
>IMGA|Medtr5g090160.1 Haem peroxidase, plant/fungal/bacterial
chr05_pseudomolecule_IMGAG_V3 35125187-35123779 E
EGN_Mt090430 20090702
Length = 360
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 158 VQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYF 217
V++L W+ I + F + I +PL+ + D L+W + G+YSVK+ Y
Sbjct: 2 VKDLLIGSPPDWNKKLIEDTFIPFEGIQIQQLPLTDKENQDSLMWMFSETGVYSVKTGY- 60
Query: 218 MALKVF------GKEPERRDGEIWGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLD 270
A++ + G E +W K+W L ++P K +W+++ +P + L NRG+
Sbjct: 61 QAIQCWKNNRDQGPSSEEIMKTVWKKVWGLQTIPRHKVLIWKIINRALPVRSELINRGIR 120
Query: 271 IDRKCFFCDGEQE-INHVLVTCERARSVW 298
C CD E INH+ + CE R W
Sbjct: 121 CSLLCPRCDSTIETINHLFLNCEHTRREW 149
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M V+LLP L D + K N FWWG KG+HWLSW R+ K GGM F++L F+V
Sbjct: 348 MSVYLLPNKLVDAIEKIINAFWWGHGGTTRKGLHWLSWKRLSVHKNYGGMGFKDLTSFHV 407
Query: 61 AMLEKQGWRL 70
AML + WR+
Sbjct: 408 AMLGVR-WRI 416
>IMGA|Medtr7g021160.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
5113686-5112454 H EGN_Mt090430 20090702
Length = 410
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERR--- 230
I + F + D I IP+ + D L+W Y+ GIYSVKS Y A++ + + +
Sbjct: 2 IRSQFISLDQNHIEQIPIINTTNQDELMWMYELNGIYSVKSGY-QAIRSWQIQQKHNTTP 60
Query: 231 ----DGEIWGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-I 284
+ +W KLW+L ++P K +WR+L N +P + L RG+ C C+ + E I
Sbjct: 61 NCSSETTVWKKLWKLHTIPRHKVILWRILHNSLPVRSELNKRGIHCSILCPRCNSKMETI 120
Query: 285 NHVLVTCERARSVW 298
H +TC W
Sbjct: 121 THTFMTCPNILRTW 134
>IMGA|Medtr5g073420.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
26369293-26369057 H EGN_Mt090430 20090702
Length = 78
Score = 68.6 bits (166), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +FLL SL D + K N FWW +GIHWLSW+++ K+ GGMSF++L FN+
Sbjct: 14 MSIFLLLSSLIDAIEKMLNAFWWEHGGSNNRGIHWLSWEKLTLHKQYGGMSFKDLTAFNL 73
Query: 61 AMLEK 65
AML K
Sbjct: 74 AMLGK 78
>IMGA|Medtr3g030620.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
8345624-8344229 H EGN_Mt090430 20090702
Length = 222
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +F LP+S DE+ + N FW +GI+W+SWD++ K DGG
Sbjct: 15 MSLFTLPVSHCDEIERMMNSFWRCHSGGQSRGINWISWDKLSMHKNDGG----------- 63
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSN 100
KQ WRL+T +L R +K +++ R F ++LG N
Sbjct: 64 ----KQSWRLMTNPISLVARTYKERYYLRCIFFESTLGYN 99
>IMGA|AC225507_9.1 Polynucleotidyl transferase, Ribonuclease H fold
AC225507.11 35556-36938 E EGN_Mt090430 20090702
Length = 358
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 201 VWHYKRRGIYSVKSSYFMALKVF------GKEPERRDGEIWGKLWRL-SVPPVKDFVWRV 253
+W Y G Y+VKS Y AL+ + G ++ IW KLW L ++P K VWR+
Sbjct: 1 MWMYSNNGNYTVKSGY-EALQSWKNNSNPGPSTSSQNNNIWKKLWALHTIPRHKMIVWRI 59
Query: 254 LRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVW 298
L N +P + L RG++ C C E NH+ ++CER + VW
Sbjct: 60 LHNTLPVRTELNKRGVNCPPLCPRCYSNLETTNHIFMSCERTQRVW 105
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%)
Query: 77 LFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPW 136
L + I ++ +F DFL++ LG+N FV ++I ++ ++K G RWR+ I ++ PW
Sbjct: 243 LTFMIGQSAYFPHGDFLSSRLGANLGFVLRSIFSAKMVVKQGARWRIGSGATIPLLSTPW 302
Query: 137 IPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNS 196
+ E S +++ +VQ++ K W+ I NLF N + I+ L
Sbjct: 303 LKDECSLTMDNPMYVPLSHVKVQDITEPSTKVWNTTVISNLFDHNTTQLILNTHLQPLVH 362
Query: 197 PDVLVWHYKRRG 208
D L+W ++ G
Sbjct: 363 EDKLIWKVEKNG 374
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%)
Query: 77 LFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPW 136
L + I ++ +F DFL++ LG+N FV ++I ++ ++K G RWR+ I ++ PW
Sbjct: 243 LTFMIGQSAYFPHGDFLSSRLGANLGFVLRSIFSAKMVVKQGARWRIGSGATIPLLSTPW 302
Query: 137 IPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNS 196
+ E S +++ +VQ++ K W+ I NLF N + I+ L
Sbjct: 303 LKDECSLTMDNPMYVPLSHVKVQDITEPSTKVWNTTVISNLFDHNTTQLILNTHLQPLVH 362
Query: 197 PDVLVWHYKRRG 208
D L+W ++ G
Sbjct: 363 EDKLIWKVEKNG 374
>IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
31873812-31875697 H EGN_Mt090430 20090702
Length = 485
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 106/301 (35%), Gaps = 99/301 (32%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M +++LP ++ +++ N F+
Sbjct: 79 MSIYVLPRTVINDIEMMLNS------------------------------------FWWG 102
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
GW LT +L +IFKA++F FL+A G NP + + I S ++L G R
Sbjct: 103 GGGGNGGWNFLTNPPSLISQIFKARYFPITSFLDAKFGFNPSYAWRIIWMSRQILSRGCR 162
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCA 180
W + D I V+ PW+ S + + K W
Sbjct: 163 WSIGDGSHIRVMGDPWLCSGSQLL--------------------KTKEW----------- 191
Query: 181 NDVRAIVGIPLSIFNS--PDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKL 238
A V I S+F S D +VW + G+YSV+S Y + ++
Sbjct: 192 ----AHVVIQTSLFPSVQEDKVVWQEESNGLYSVRSGYHIVVR----------------- 230
Query: 239 WRLSVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSV 297
V P + R +PT+ L R + C +CD E+E H V CE AR
Sbjct: 231 ---EVVPSTHY-----RGCIPTRVNLNQRHVSCTNICLWCDYEEETYWHAFVECEVARES 282
Query: 298 W 298
W
Sbjct: 283 W 283
>IMGA|Medtr7g068430.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
14039604-14037230 H EGN_Mt090430 20090702
Length = 514
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 46/305 (15%)
Query: 29 GGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFS 88
GG+ I W+SW +C K+ GG+ R++ N+++L K WRLL +TL+ I ++ S
Sbjct: 9 GGRKISWVSWKVVCPPKEVGGLGVRDVSLVNLSLLAKWKWRLLQGGNTLWKEILVERYGS 68
Query: 89 RV-DFLNASLG---SNPIFV*KNILTSSKLLKHGVRWRVED-------ERDINVVKKPWI 137
+V +FL +G +N K++++ +K + V W ED K W
Sbjct: 69 KVGEFLEEGVGVWQTNASRWWKDLVSLAK--GNEVDWFYEDVIRKVGNGATTGFWKTAWR 126
Query: 138 PRES-------SFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFC--ANDVRAIVG 188
E F I + + + N+ RW LF N + ++G
Sbjct: 127 GGEPFMMKLHRLFSIATFQEATIQEMWISNV---GRGRWRFSWRCQLFVWEVNLLDELLG 183
Query: 189 I--PLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGK--------EPERRDGEIWGKL 238
+ + D W ++ I++VKS + +K+ G+ E ERR ++ ++
Sbjct: 184 VLEGFELGEVEDKWRWKLEKDDIFTVKS---INIKLEGRGLAEVVCPEGERR---VFRQI 237
Query: 239 WRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGL---DIDRKCFFC-DGEQEINHVLVTCER 293
W+ V+DFVW+ L + +PT+ R + C C D + +H+ + C+
Sbjct: 238 WKTGASSKVRDFVWKALLDWIPTRVNFGIRNCLPPGVGSNCVHCMDFSESTSHLFLHCDL 297
Query: 294 ARSVW 298
AR+VW
Sbjct: 298 ARNVW 302
>IMGA|Medtr3g021630.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
5450314-5449526 H EGN_Mt090430 20090702
Length = 117
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 195 NSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRV 253
+ D L+W ++ G YSVK++Y + ++ E WG +W+L VPP VK+ +WR+
Sbjct: 7 HEEDQLIWRLEKNGQYSVKTAYRLCMENIADNSHLYRIENWGSIWKLKVPPKVKNLLWRI 66
Query: 254 LRNVVPTKDRLRNRGLDIDR 273
R+ +PT+ RL ++G+ + R
Sbjct: 67 CRDCLPTQARLLDKGVTVLR 86
>IMGA|Medtr1g025190.1 RNA-directed DNA polymerase, related
chr01_pseudomolecule_IMGAG_V3 6196727-6197277 H
EGN_Mt090430 20090702
Length = 142
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 144 VIEDGSSSIDPDFRVQN--LFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLV 201
+ D S++I P R + LFCHE W+ + LF DV AI+ IPL+ ++
Sbjct: 20 ICADYSAAI-PFARTHSSSLFCHETSSWNQGFLAALFNTGDVNAIMRIPLTYMEQHYTII 78
Query: 202 WHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRV 253
W G YS+K++Y + L + + + W +W+L VP +K WR
Sbjct: 79 WRLTSNGEYSLKTAYKLCLSTILQNNQSQTLGNWSNIWKLDVPSKMKHLSWRA 131
>IMGA|Medtr1g016440.1 probable reverse transcriptase At2g02650 -,
related, related chr01_pseudomolecule_IMGAG_V3
3173721-3173118 H EGN_Mt090430 20090702
Length = 143
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 191 LSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVP-PVKDF 249
L S D +VW G+YSV+S Y +A + W +W++ P ++
Sbjct: 11 LDCVVSMDKVVWQ-DSNGLYSVRSGYRIAAREVASSTHYYIQGEWNAIWKVQAPHKARNL 69
Query: 250 VWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
+WR+ +PT+ +L R + +C +CDGE+E N H V + AR W
Sbjct: 70 LWRICWGCIPTRSKLIQRHVPCTNRCTWCDGEEETNWHAFVGYDVARESW 119
>IMGA|Medtr1g016370.1 probable reverse transcriptase At2g02650 -,
related, related chr01_pseudomolecule_IMGAG_V3
3148938-3149541 H EGN_Mt090430 20090702
Length = 143
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 191 LSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVP-PVKDF 249
L S D +VW G+YSV+S Y +A + W +W++ P ++
Sbjct: 11 LDCVVSMDKVVWQ-DSNGLYSVRSGYRIAAREVASSTHYYIQGEWNAIWKVQAPHKARNL 69
Query: 250 VWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
+WR+ +PT+ +L R + +C +CDGE+E N H V + AR W
Sbjct: 70 LWRICWGCIPTRSKLIQRHVPCTNRCTWCDGEEETNWHAFVGYDVARESW 119
>IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
12119249-12120974 H EGN_Mt090430 20090702
Length = 477
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 41/269 (15%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M++ P S+ ++L K T KF W K GKG+H +SWD++ K GG+ R N
Sbjct: 193 MQISWTPQSICNQLDKMTRKFIW--KGTDGKGVHLVSWDKITRPKSLGGLGVRVARNANT 250
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
A+L K W + T + + +I K+ + L+ N ++L + +L+ G+
Sbjct: 251 ALLGKLVWDIHTNANKSWVQILSNKYLGNYNVLDVP-KKNGSTTWNSMLKARSVLRDGLV 309
Query: 121 WRVEDERDINVVKKPWIPRESSFVIEDGSSSI-DPDFRVQNLFCHEGKRWDIDKIMNLFC 179
+RV +G++S + F DI I C
Sbjct: 310 FRV----------------------GNGTTSFWYSSWTTLGTFASMVLWVDIHYIS--LC 345
Query: 180 ANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLW 239
D+ D + W GIY+V+S YF L ++ D W +W
Sbjct: 346 IRDLII-----------DDHITWANHLDGIYTVRSGYFWLLTTHSEDHHDEDVS-WNWIW 393
Query: 240 RLSVPP-VKDFVWRVLRNVVPTKDRLRNR 267
++ P +K W +PTK L R
Sbjct: 394 KMKAPEKIKFLFWTASHVSLPTKALLHRR 422
>IMGA|Medtr1g149770.1 contains similarity to reverse trancriptase,
related, related chr01_pseudomolecule_IMGAG_V3
33129977-33130712 E EGN_Mt090430 20090702
Length = 100
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 62 MLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSS-KLLKHGVR 120
ML +QGWR++ ++LF K ++F R +FLNA+LG NP + ++IL +++ H
Sbjct: 1 MLARQGWRIIQNEESLFGSCLKRRYFPRTNFLNATLGYNPSYTWRSILQDRMEVIDHVGL 60
Query: 121 WRVEDERDINVVKKPWIPRESS 142
WRV D + + W+P +
Sbjct: 61 WRVGDGKSTKIWGDNWLPYQQG 82
>IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233572.2 97249-98280 H EGN_Mt090430
20090702
Length = 258
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDG 48
M FLLP +L +E+ N FWWGL + GKGI WLSWD++ RK+ G
Sbjct: 184 MSTFLLPTTLGEEIQIMINSFWWGLNRRQGKGIDWLSWDKLTTRKEYG 231
>IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233685.2 242381-241350 H EGN_Mt090430
20090702
Length = 268
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDG 48
M FLLP +L +E+ N FWWGL + GKGI WLSWD++ RK+ G
Sbjct: 194 MSTFLLPTTLGEEIQIMINSFWWGLNRRQGKGIDWLSWDKLTTRKEYG 241
>IMGA|Medtr2g055540.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
14903666-14903472 H EGN_Mt090430 20090702
Length = 64
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMS 51
M +FL+P S+ DE+ K N FWW + KGI WLSWD++ K+DGGMS
Sbjct: 14 MSIFLIPSSIGDEIEKIMNSFWWENGGNRNKGIKWLSWDKLSVHKRDGGMS 64
>IMGA|Medtr8g128940.1 RNA-directed DNA polymerase, related
chr08_pseudomolecule_IMGAG_V3 30299266-30298795 H
EGN_Mt090430 20090702
Length = 120
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGK---EPERR 230
I +F + I+ IPLS D VWH++R G +SV+S++ + V + E
Sbjct: 18 IKEIFSEFEANQILNIPLSWRLPSDKRVWHWERNGNFSVRSAHHLIKDVDARNTLEASST 77
Query: 231 DG-EIWGKLWRLSVP-PVKDFVWRVLRNVVPTKDRLRNRGLD 270
+G EIW +WR+ P VK+F+ R+ R+++P + RL+ +GL
Sbjct: 78 NGQEIWKAVWRIKAPHSVKNFLRRLTRDILPARCRLKRKGLS 119
>IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 20655028-20657384 H
EGN_Mt090430 20090702
Length = 376
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 212 VKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLD 270
VKS+Y + ++ R W +W+L VPP V++ +WR+ R + T+ RL ++G+
Sbjct: 30 VKSAYRLCVEELIDASHLRRPGNWSSIWKLKVPPKVRNLIWRICRLCLSTRIRLHDKGVQ 89
Query: 271 IDRKCFFCDGEQE-INHVLVTCERARSVWR 299
+C C+ E + H+ C A VWR
Sbjct: 90 CPTQCVSCESSHEDMAHLFFACSFAIQVWR 119
>IMGA|Medtr5g040610.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
17349249-17348078 H EGN_Mt090430 20090702
Length = 340
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 230 RDGEIWGKLWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGE-QEINHV 287
+D IW KLW L ++P K+F+WRV+ N +P + L RG+ C C+ + ++INH
Sbjct: 30 QDTTIWKKLWALKTIPRHKNFLWRVINNSLPLRSELGKRGIQCSPLCPHCNSKIEDINHA 89
Query: 288 LVTCERARSVW 298
+TC VW
Sbjct: 90 FMTCSYITRVW 100
>IMGA|AC232874_27.1 hypothetical protein AC232874.1 84446-85505 H
EGN_Mt090430 20090702
Length = 336
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 158 VQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYF 217
V++L HE K W ID ++N F A D+ AI I + N D L+W ++ +G +
Sbjct: 2 VKDLIDHENKEWKIDVLINNFLAIDIPAIEQISIINTNHKDELMWMFEPKGGLHCQEWLH 61
Query: 218 MALKVFGKEPERRDGEIWGKLWRLSVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFF 277
+ EI K + K+ +WR+L N +P + L RG+
Sbjct: 62 ----------SHSNLEIQNKYISYNQFQHKNLLWRILTNSLPIRSELEKRGVKCSPLYPR 111
Query: 278 CDGEQEI-NHVLVTCERARSVW 298
C+ + EI HV +TC+ W
Sbjct: 112 CNIKVEILEHVFMTCQHISRTW 133
>IMGA|Medtr2g014330.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 3620402-3620930 H
EGN_Mt090430 20090702
Length = 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 19 NKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLF 78
N F W + + KG+ WL WD++ KKDG M FRN + F ++
Sbjct: 3 NSFGWCNEGNKNKGVKWLFWDKLSTSKKDGCMGFRNPYIF----------------KAMY 46
Query: 79 YRIFKAKHFS-RVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
IFKA + + ++ L AS GSN I++ ++I ++ +LK VR
Sbjct: 47 NLIFKAMYLTVQISLLEASWGSNSIYLWRSICKTNPILKQRVR 89
>IMGA|Medtr2g013680.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 3141918-3141390 H
EGN_Mt090430 20090702
Length = 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 19 NKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLF 78
N F W + + KG+ WL WD++ KKDG M FRN + F ++
Sbjct: 3 NSFGWCNEGNKNKGVKWLFWDKLSTSKKDGCMGFRNPYIF----------------KAMY 46
Query: 79 YRIFKAKHFS-RVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
IFKA + + ++ L AS GSN I++ ++I ++ +LK VR
Sbjct: 47 NLIFKAMYLTVQISLLEASWGSNSIYLWRSICKTNPILKQRVR 89
>IMGA|Medtr4g157980.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
39513788-39514207 H EGN_Mt090430 20090702
Length = 139
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 167 KRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKE 226
+ W+ + N + + I +PL + D+ +W Y + IYSVKS Y + +
Sbjct: 6 QEWNQTILENNLLSFEKDHINQLPLIKEDIEDIFMWMYTKDNIYSVKSGYNFIREWYQNR 65
Query: 227 PERRDGEIWGK-LWRL-SVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE- 283
+R + +W L ++P KDF+ R+L + VP + L +GL D C C + E
Sbjct: 66 GQRTSNNTANQTIWNLNTIPRHKDFLGRILNDPVPVRYALHLKGLLNDMLCPRCVTKMET 125
Query: 284 INHVLVTCERARSV 297
+NHV++ C A +
Sbjct: 126 LNHVIMECHFATNT 139
>IMGA|Medtr6g092910.1 H+-transporting two-sector ATPase, alpha/beta
subunit, central region, related, putative
chr06_pseudomolecule_IMGAG_V3 19708354-19711332 E
EGN_Mt090430 20090702
Length = 215
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 194 FNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWG--------KLWRLSVPP 245
F+ D W + GIYSVKS+Y V KE +IWG +WR PP
Sbjct: 20 FDKKDECRWKLEDNGIYSVKSAYLKLEDVVLKE------DIWGVEEKGVFENMWRSPAPP 73
Query: 246 -VKDFVWRVLRNVVPTKDRL---RNRGLDIDRKCFFCD-GEQEINHVLVTCERARSVWRR 300
V F WRV N + T+D L ++ C FC+ E+ + H+ + C+ A VW R
Sbjct: 74 KVIAFGWRVFLNRISTRDNLALWNALPPEVSTLCVFCNLKEESVTHIFLHCDVASLVWSR 133
>IMGA|Medtr2g045730.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
12697004-12697693 H EGN_Mt090430 20090702
Length = 166
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 193 IFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVW 251
+ +SPDV VW + GIYS++ Y + G E W +W L VP ++ F+W
Sbjct: 1 MHDSPDVWVWTNRTSGIYSIQEGYQW---LMGAHTSLLGEESWNWIWHLCVPSNIRFFLW 57
Query: 252 RVLRNVVPTKDRLRNRGLDIDRKCFFCD-GEQEINHVLVTCERARSV 297
++ + VP + L +R + C C+ G +++ H L C RA+ V
Sbjct: 58 QLCHDSVPFRSVLLSRNV-----CSICNQGSEDMLHALYPCPRAKDV 99
>IMGA|Medtr3g147880.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
38411077-38409788 H EGN_Mt090430 20090702
Length = 359
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 205 KRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDR 263
K +GIYS KS+Y L F + E W +W+L V ++ F+W++ + +PTK
Sbjct: 11 KFKGIYSTKSAYHTLLNRF-HDVENNHNFNW--IWKLKVSSNIQFFMWQICLSSLPTKSI 67
Query: 264 LRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVWRR 300
L +R + C C+ +E + H L+TC A+ VW++
Sbjct: 68 LVSRHIAPSATCPICNASEEAMIHCLLTCTIAKEVWKK 105
>IMGA|Medtr2g056130.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 15253178-15253955 H
EGN_Mt090430 20090702
Length = 128
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 198 DVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRN 256
D L+W ++ G Y V+SSY + + W ++W+L VP V +FVWRV RN
Sbjct: 51 DKLIWKAEKDGQYLVRSSYRLCVNTIVDNSHLHKPSGWNEIWKLEVPSKVNNFVWRVCRN 110
Query: 257 VVPTKDRLRNRG 268
+PT RL RG
Sbjct: 111 CLPTWARLTYRG 122
>IMGA|Medtr8g026870.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr08_pseudomolecule_IMGAG_V3
5935308-5934228 H EGN_Mt090430 20090702
Length = 292
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 155 DFRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKS 214
+ V +L E + WDIDKI +LF + V+AI+ PL D + W +R G Y+VK+
Sbjct: 24 NLHVSDLIADEERVWDIDKIESLFTDDMVQAILDTPLFSEVQNDRITWMMERNGRYTVKT 83
Query: 215 SY-FMALKVFGKEPERRDGEIWGKLWRLSVP 244
Y +K+ + +GE W ++W ++ P
Sbjct: 84 DYKLTMMKLLHNDRFHVEGE-WHRIWNVNSP 113
>IMGA|Medtr6g093340.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 19992377-19992604 H
EGN_Mt090430 20090702
Length = 75
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 31 KGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRV 90
K I W+SWDRMC K GG +NL FN+ + K+ WR L + + ++Y++ ++S
Sbjct: 2 KVICWISWDRMCQTKNSGGRVVKNLDMFNIVLEAKRRWRFLVDKEIIWYKLL---NYSIC 58
Query: 91 DFLNASLGSNPI 102
F +A L N +
Sbjct: 59 FFRHAILNINVL 70
>IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
8119740-8120808 H EGN_Mt090430 20090702
Length = 303
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 245 PVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVWR 299
VK+ VWRV R +PT+ RL ++G++ C C+ E +HVL C RAR VW+
Sbjct: 13 SVKNLVWRVCRGCIPTRARLLDKGVNCSSLCVMCEESYEDASHVLFDCPRARKVWQ 68
>IMGA|AC235675_13.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235675.1 34455-34255 H
EGN_Mt090430 20090702
Length = 66
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 19 NKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLF 78
N FWWG K I WLSW ++ K++GGM F++L+ N+A+L KQ WRL+T + L
Sbjct: 2 NSFWWGNGGGLNKEIKWLSWSKL-DLKENGGMGFKDLYMSNLALLGKQVWRLVTNPNFLV 60
Query: 79 YRI 81
R+
Sbjct: 61 ARL 63
>IMGA|Medtr2g114260.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 26977303-26977923 H
EGN_Mt090430 20090702
Length = 178
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M FLLP L + K FWWG + K +HW + + K +GGM F+ L FN+
Sbjct: 77 MSCFLLPKGLCSRIEKVVCFFWWG-STEHKKKMHWTKREHLFKSKLEGGMGFKILRGFNL 135
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
A L KQ ++GSN F ++I + +++ G
Sbjct: 136 AKLTKQ----------------------------VNIGSNSNFAWRSIYNAKWVIQKGSC 167
Query: 121 WRVEDERDINV 131
WR+ + + +N+
Sbjct: 168 WRIGNGQSVNI 178
>IMGA|Medtr5g025230.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
10087747-10088046 H EGN_Mt090430 20090702
Length = 99
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 41/63 (65%)
Query: 58 FNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKH 117
FN A+L KQ WRL+T T+++ ++FK+++F R +F+ +++G P + +++ + +
Sbjct: 15 FNKALLGKQCWRLITNTNSIIAKVFKSRYFPRSNFMESTIGYQPSYSWRSMFNAKDFIDL 74
Query: 118 GVR 120
G R
Sbjct: 75 GAR 77
>IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
6317912-6319402 H EGN_Mt090430 20090702
Length = 456
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 165 EGKRWDIDKIMNLFCANDVRAIVG-IPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVF 223
+ +WD + L D+R +V + + + D L+W + G S+K Y +
Sbjct: 308 QNNQWDTPNEL-LHAMPDLRRLVTQVTIPVQQKEDELIWCHSTNGTLSMKEVYESKKHHY 366
Query: 224 GKEPERRDGEIWGKL-WRLSVPPVKDF-VWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGE 281
P+R+ W KL W PP K VWR++ N +PT + L RG ++ C C +
Sbjct: 367 ---PKRK----WAKLIWSKDYPPSKYLMVWRLMLNKLPTNENLTERGCNLPSMCSLCSKQ 419
Query: 282 QEIN-HVLVTCERARSVW 298
E + H+ C + ++W
Sbjct: 420 SENSFHLYFECPYSFNIW 437
>IMGA|Medtr8g133770.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 31993480-31994567 H
EGN_Mt090430 20090702
Length = 318
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 183 VRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMA-LKVFGKEPERRDGEIWGKLWRL 241
V+AI+ PL D + W +R G Y+VK+ Y +A +++ + +GE ++W++
Sbjct: 24 VQAILDRPLFAEVHNDRIAWMMERSGRYTVKTDYKLAMMELLHTDQFHVEGEC-HRIWKV 82
Query: 242 SVP-PVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
+ P + +WR+ R V + RL++R + + C +CD E + H V C R W
Sbjct: 83 NSPHKAHNLLWRICRGCVLMRLRLQSRHVLCEVLCPWCDTTVEDDWHAFVGCTVVRESW 141
>IMGA|Medtr5g039730.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
16893625-16895135 E EGN_Mt090430 20090702
Length = 121
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 189 IPLSIFNSPDVLVWHYKRRGIYSVKSSY-FMALKVFGKEPERRDGEIWGKLWRLSVPPVK 247
I LS+F+ PD L W+ G+ + + +Y F+A + + ++W PP +
Sbjct: 19 ITLSVFDVPDSLNWNLATDGVLTNQLAYSFLA-------GTGQKVSWFKQVWNTYSPPTR 71
Query: 248 DFV-WRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEINH 286
F+ WR++ + +P D LR RG + C FC E +H
Sbjct: 72 AFIAWRLIHDKLPINDNLRKRGCYVVSICCFCRNSAETSH 111
>IMGA|Medtr3g013410.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
2559713-2560955 H EGN_Mt090430 20090702
Length = 176
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 33 IHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLFYRIFKAKH 86
I W+ WD +C +++GG+ R L FNV +L K WR+L + + L+Y + KA++
Sbjct: 48 IAWVDWDSICLSREEGGLGVRKLREFNVELLRKWCWRMLVDKEGLWYLVLKARY 101
>IMGA|Medtr1g009220.1 contains similarity to reverse trancriptase,
related, related chr01_pseudomolecule_IMGAG_V3
1138065-1137052 H EGN_Mt090430 20090702
Length = 208
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 75 DTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSS-KLLKHGVRWRVEDERDINVVK 133
D L + K ++F R+ FL A +G P + ++I+ + +++ WRV D I++ +
Sbjct: 5 DLLISQCLKERYFPRISFLRAFVGYCPSYTWRSIMQACVDVIEKIDIWRVRDGHLIHIWE 64
Query: 134 KPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKR-WDIDKIMNLFCANDVRAIVGIPLS 192
W+ ++ I S + D + F H+ R W+ I + F + + I+ +P
Sbjct: 65 DNWLSYQNGHKIWSPKPS-NCDIMFVSDFIHDDIRCWNAPLINDTFLPFEAQQILQLPFF 123
Query: 193 IFNSPDVLVWHYKRRGIYSVKSSY 216
D VW R I+SVKS+Y
Sbjct: 124 FSQLQDEFVWDVSRSTIFSVKSAY 147
>IMGA|Medtr4g036130.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
8800455-8799179 H EGN_Mt090430 20090702
Length = 226
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 159 QNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFM 218
Q++F + W I NLF A+ + I+ L + D L+W ++ +S+
Sbjct: 14 QSIFSAKIVVWKAPLIYNLFDASTAQFILNTLLHPLVTEDKLIWKGEKSD-----NSHLH 68
Query: 219 ALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFF 277
A W +W+L VPP VK +WR+ R ++ RL + G+ C
Sbjct: 69 A------------PGCWNLIWKLKVPPKVKSILWRICRG---SRGRLNSTGVHCPLDCVH 113
Query: 278 CDGEQEIN-HVLVTCERARSVWR 299
C+ E N H+L+ C + VWR
Sbjct: 114 CNINYEDNMHILIECPKVIQVWR 136
>IMGA|Medtr5g086160.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
33033257-33037285 E EGN_Mt090430 20090702
Length = 178
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 201 VWHYKRRGIYSVKS--SYFMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNV 257
+W G+Y+V+S ++ M L V GK D W LW VPP ++ WR+ R
Sbjct: 1 MWLADMSGVYTVRSGCNFGMRLAVEGKNHVTGD---WSSLWHTRVPPKTRNLAWRICRRC 57
Query: 258 VPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVW 298
+PT+ RL R + C C+ + + + H+L C+ W
Sbjct: 58 LPTRRRLHERRVQGPLNCAVCEDQVDDDWHLLFHCKTMAEYW 99
>IMGA|Medtr2g129530.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
31333511-31334185 H EGN_Mt090430 20090702
Length = 122
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 19 NKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEKQGWRLLTETDTLF 78
N FWWG K I WLSW ++ K++GGM F++L+ N+A+L KQ WR ++ ++
Sbjct: 2 NSFWWGNGGGLNKEIKWLSWSKL-DLKENGGMGFKDLYMSNLALLGKQVWR--NNSNFMW 58
Query: 79 YRIFKA 84
I++A
Sbjct: 59 KSIYEA 64
>IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23354620-23355450 H EGN_Mt090430 20090702
Length = 276
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 11/220 (5%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
M+V LP S + + + F W K I+ + W+++ KK GG+ R N
Sbjct: 49 MQVAWLPQSTCESIDRLAINFLW--KGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANT 106
Query: 61 AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
++L + WRL D+L+ ++ K+F L + S + I+ + L+ G
Sbjct: 107 SLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSV-TWNAIMKARFTLRDGFD 165
Query: 121 WRV-EDERDINVVKKPWIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFC 179
+R+ +D V I + + V+ D + RV+++F + W+ + I
Sbjct: 166 FRLGDDNSSFWFVNWSGIGKLTEKVLYVDIH--DLNLRVKDVFVNGA--WNFNHIYTTLP 221
Query: 180 ANDVRAIVGIPLSIFNS--PDVLVWHYKRRGIYSVKSSYF 217
A+ ++ +P+ + NS D W GIYS + Y+
Sbjct: 222 ASITDSLKILPICL-NSRVTDGYTWKGNLHGIYSAEDGYY 260
>IMGA|Medtr3g114700.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
29105577-29107753 H EGN_Mt090430 20090702
Length = 274
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 198 DVLVWHYKRRGIYSVKSSY--FMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVL 254
DV +W + G++ VKS Y + ++ +LW+ S P V F W+++
Sbjct: 50 DVWLWKREDDGVFMVKSMYTKLEGFDFLENNWGVEEHRVFDQLWKSSAPSKVVAFYWKMI 109
Query: 255 RNVVPTKDRLRNRGL---DIDRKCFFCDGEQE-INHVLVTCERARSVW 298
N +PT+ +R R D+ C CD E E NH+ + C AR +W
Sbjct: 110 LNHIPTQMNIRRRNALLSDVSSLCVLCDREVESSNHLFMHCSVARQLW 157
>IMGA|Medtr8g119160.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 26940646-26936997 H
EGN_Mt090430 20090702
Length = 255
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 238 LWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFC---DGEQEINHVLVTCER 293
+W L VPP +K F WR+L N +PT+ L+ RG+ C C D E E+ H+ + C+
Sbjct: 29 IWSLHVPPKIKHFFWRLLHNCLPTRSNLQGRGVPCQSACVTCNNNDLEDEM-HLFMHCKF 87
Query: 294 ARSVWR 299
A W+
Sbjct: 88 AIDCWK 93
>IMGA|Medtr1g105630.1 H+-transporting two-sector ATPase, alpha/beta
subunit, central region, related, related
chr01_pseudomolecule_IMGAG_V3 21837322-21838518 E
EGN_Mt090430 20090702
Length = 362
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 180 ANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMAL---KVFGKEPERRDGEIWG 236
AN + + G +I D W+ + +YSVKS Y +V G E + ++G
Sbjct: 67 ANLLADLEGFVFTIVE--DKWTWNLEDAEVYSVKSLYDKLEEDGRVEGIHTEM-EKYVFG 123
Query: 237 KLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGL---DIDRKCFFCD-GEQEINHVLVTC 291
+W++ VP V FVW+ L + +PT+ L R DI C +C+ G + +H+ + C
Sbjct: 124 NIWKVGVPSKVTAFVWKALLDRIPTRLNLEIRHCLPPDIGTNCVWCEVGVETTSHIFLHC 183
Query: 292 ERARSVWRR 300
+ R+VW +
Sbjct: 184 DLVRNVWMK 192
>IMGA|Medtr2g074460.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
17116548-17117282 H EGN_Mt090430 20090702
Length = 244
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 183 VRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKL-WRL 241
V +I+ I L + D +VW + G S K +VF + W L WR
Sbjct: 57 VASILNITLPVTPLLDKVVWIHTTDGDLSAK-------QVFLFLRGTSNLVDWATLIWRP 109
Query: 242 SVPPVKDFV-WRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEI-NHVLVTCERARSVW 298
+PP F+ WR++ VPT + L++RG I C C E +H+ +C+ A +W
Sbjct: 110 CIPPSHSFIFWRLMHKKVPTDEHLQSRGCTIVSICVLCFRAAETSDHIFFSCDYAVRLW 168
>IMGA|Medtr6g015400.1 probable reverse transcriptase At2g02650 -,
related, related chr06_pseudomolecule_IMGAG_V3
3835970-3836323 H EGN_Mt090430 20090702
Length = 117
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 192 SIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRDGEIWGKLWRLSVPPV-KDFV 250
S+ + D LV ++ +G Y+VK +Y ++ + R W ++W++ V K F+
Sbjct: 3 SLQENDDKLVSNFNNKGRYTVKPTYKYDMETLVNNEQYRISVDWMRMWKIRVSQSRKVFL 62
Query: 251 WRVLRNVVPTKDRLRNRGLDIDRKCFFCDG--EQEINHVLVTCERARSV 297
WR LR V PT L+ RG+ C C+ E + N L+ +R ++
Sbjct: 63 WRELRGVFPTHVSLQVRGIPCSDICPHCETNYENDYNTCLLVVKRQNNM 111
>IMGA|Medtr4g107980.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 23734799-23733694 H
EGN_Mt090430 20090702
Length = 255
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 198 DVLVWHYKRRGIYSVKSSYFMALKV----FGKEPERRDGEIWGKLWRLSVPP-VKDFVWR 252
D LVW ++ GI+SVK +Y + + ++W ++W +P V +F+WR
Sbjct: 10 DKLVWPAEKNGIFSVKFAYHILCNINLSHLPTSSSHSHSKLWNRIWSSHLPTRVWNFIWR 69
Query: 253 VLRNVVPTKDRLRNRG 268
+ +N++PT+ L+ RG
Sbjct: 70 LAKNIIPTRGNLKRRG 85
>IMGA|Medtr2g073860.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 16747664-16748035 H
EGN_Mt090430 20090702
Length = 123
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 156 FRVQNLFCHEGKRWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSS 215
VQNL + K W D + +F A DV +IV IPL + S + + R G YSVKS+
Sbjct: 8 LTVQNLIRTDLKSWSFDVLTAVFVAPDVSSIVRIPLHLHLSCEQRIKTGTRHGSYSVKSA 67
Query: 216 YFMALKVFGKEPE 228
Y +++K F E
Sbjct: 68 YNLSVKYFTNSAE 80
>IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
25622719-25621333 H EGN_Mt090430 20090702
Length = 441
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 94/245 (38%), Gaps = 42/245 (17%)
Query: 77 LFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDINVVKKPW 136
L+ ++ ++ V+ L AS + + +IL + +LK G WRV + + PW
Sbjct: 8 LWVQLLSDRYAMGVNTLLASARPSVSVIWSSILHARDVLKDGFSWRVGSDNS-SFWSCPW 66
Query: 137 --------IP-----RESSFVIEDGSSSIDPDFRVQNLFCHEGKRWDIDKIMNLFCANDV 183
IP + ++D SS +P N+ + + D I N+
Sbjct: 67 SSLGILGRIPPYIDIHDLQLTVKDVISSNNPH---TNILYTQLPPFAADTINNIHFK--- 120
Query: 184 RAIVGIPLSIFNSP--DVLVWHYKRRGIYSVKSSYFMALK----VFGKEPERRDGEIWGK 237
FN+ D +WH + G Y+ KS Y L V P I
Sbjct: 121 ----------FNASVEDTFIWHNNKNGTYTPKSGYSWLLSRKELVIISNPPPSCSWI--- 167
Query: 238 LWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERAR 295
W+L +P +K F W N VPT L +R + C C E H + C ++
Sbjct: 168 -WKLHMPEKIKLFFWLACHNSVPTLSMLNHRNIAPSPVCSRCGLHDETFLHCVRDCAHSK 226
Query: 296 SVWRR 300
S+W+R
Sbjct: 227 SIWQR 231
>IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 24592281-24593243 H
EGN_Mt090430 20090702
Length = 320
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 247 KDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQEIN-HVLVTCERARSVWR 299
K F+WR +R V+PT+ RL+++G+ C FC+ E + HV + CE ++VWR
Sbjct: 14 KFFLWRAVRGVLPTRMRLQDKGVPCTDCCPFCETNYENDWHVFMGCEEVKTVWR 67
>IMGA|AC235567_37.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235567.1 138545-137628 E
EGN_Mt090430 20090702
Length = 51
Score = 47.4 bits (111), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 1 MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSF 52
M FL+P +L++E+ K N FWWG K+G K I W W+++ RK+ G+
Sbjct: 1 MNAFLMPKTLANEIEKMINSFWWG-SKNGNKDIKWTQWEKLTMRKEYRGLGL 51
>IMGA|Medtr7g077260.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
16160383-16159664 H EGN_Mt090430 20090702
Length = 201
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 195 NSPDVLVWHYKRRGIYSVKSSYFMALKVF--GKEPERRDGEIWGKLWR-LSVPPVKDFVW 251
NSPD G YSVKS+Y+ LK P + ++W+ + V F W
Sbjct: 49 NSPD---------GRYSVKSAYYQLLKGLPTSGTPGGMTLQAVSRVWKSWASSKVIVFSW 99
Query: 252 RVLRNVVPTKDRLRNRGLDI--DR-KCFFCDGE-QEINHVLVTCERARSVW 298
++L + +PT++ L RG+ I DR C FCD + + H+ ++C + SVW
Sbjct: 100 QLLLDRIPTRNNLIRRGVPILVDRVGCVFCDSQSKSAVHLFLSCPSSLSVW 150
>IMGA|Medtr5g022410.1 Leucine-rich repeat
chr05_pseudomolecule_IMGAG_V3 8738399-8741638 E
EGN_Mt090430 20090702
Length = 639
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 198 DVLVWHYKRRGIYSVKSSY------FMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFV 250
D VW + G+++VKS Y F+ +G E R ++ +LW+ P V F
Sbjct: 369 DSWVWKGEAEGVFTVKSMYKKLEGLFILEDTWGDEDRR----VFHQLWKSPAPSKVIAFS 424
Query: 251 WRVLRNVVPTKDRLRNRGL---DIDRKCFFCDGEQEIN-HVLVTCERARSVWRR 300
W++L + +PT+ L R ++ C + GE+E+ H+ + C AR VW R
Sbjct: 425 WKMLLDRIPTRTNLSRRNALPPEVPLNCVWRVGEREMTKHLFLHCSLARGVWLR 478