Jatropha Genome Database

JcCB0004411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004411.10 + phase: 0 
         (417 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019680.1 Stage II sporulation E chr05_pseudomolecule...   407   e-114
IMGA|Medtr2g008670.1 Protein phosphatase 2C-like chr02_pseudomol...   140   9e-34
IMGA|Medtr3g033950.1 Protein phosphatase 2C-like chr03_pseudomol...   134   1e-31

>IMGA|Medtr5g019680.1 Stage II sporulation E
           chr05_pseudomolecule_IMGAG_V3 7366282-7363304 E
           EGN_Mt090430 20090702
          Length = 452

 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/384 (55%), Positives = 270/384 (70%), Gaps = 11/384 (2%)

Query: 43  MAASGSKAVFGDTYIDDMITTCGNGLDFSKPSGVFFADRSRASCLKASVRMRN-GELPNS 101
           MA+S S A+ GD Y+DD+I++  +  DF+K +GV+F +R+    ++ S+ +R   ++   
Sbjct: 69  MASSPSNAILGDVYVDDLISSYSSVQDFTKHAGVYFKERTHKGFVRGSLSLRRPQQVLYG 128

Query: 102 RLVCGYSSFDAIIGSSNLNGFVAGPSLKNFHTLSSAKLSAGAARDVSFDGNSREEQLGNS 161
            L  G S+FDA     N +G + GP  KNF    SA   AGAA D+SFD +  +E+L NS
Sbjct: 129 PLNFGRSTFDASWRIQN-SGLLHGPWTKNFSASYSACCLAGAAHDLSFDTSPPDEKLENS 187

Query: 162 TMVSGQT------LKLLSGSCYLPHPDKEETGGEDAHFICADEQXXXXXXXXXXXXXXXX 215
           + ++  T      LK+LSGSCYLPHPDK  TGGEDAHFIC DEQ                
Sbjct: 188 STLANITTLDRKPLKMLSGSCYLPHPDKVATGGEDAHFICEDEQAIGVADGVGGWADVGV 247

Query: 216 NAGLYSRELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNE--GIRA 273
           NAGLY++EL++NS  AI++EP GS +P RVLEKAHS TKA GSST CI+AL +E   + A
Sbjct: 248 NAGLYAQELVANSARAIREEPKGSFNPVRVLEKAHSKTKAMGSSTVCIIALIDEVKALNA 307

Query: 274 INLGDSGFMVVRDGSTVFQSPVQQHGFNFTYQL-ESGNHGDQPSSSQVFIFPVSPGDVIV 332
           INLGDSGF+V+RDGS +F+SPVQQ GFNF YQL  SG  GD PSS +VF  PV+PGD+IV
Sbjct: 308 INLGDSGFIVIRDGSVIFKSPVQQRGFNFPYQLARSGTEGDLPSSGEVFTVPVAPGDIIV 367

Query: 333 AGTDGLFDNLYNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQDA 392
           AGTDGLFDN+YNN++   VV A RA LGPQATAQKIA LARQRALD  RQ+PFSAAA + 
Sbjct: 368 AGTDGLFDNMYNNDIVGVVVGATRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEY 427

Query: 393 GFRYYGGKLDDITVVVSYVMSSNN 416
           G+R+ GGKLDD+TVVVSY+ +S N
Sbjct: 428 GYRFDGGKLDDLTVVVSYISNSVN 451


>IMGA|Medtr2g008670.1 Protein phosphatase 2C-like
            chr02_pseudomolecule_IMGAG_V3 1728611-1720868 E
            EGN_Mt090430 20090702
          Length = 1256

 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 5/253 (1%)

Query: 164  VSGQTLKLLSGSCYLPHPDKEETGGEDAHFICADEQXXXXXXXXXXXXXXXXNAGLYSRE 223
            +S   L L+SG+  LPHP +E T  EDA +I +                   N G+Y RE
Sbjct: 1007 ISRTELFLVSGAACLPHPSEELTSREDA-YIISPLNWLVVADGVGQWSLEGSNTGVYIRE 1065

Query: 224  LMSNSVSAIKD-EPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAINLGDSGFM 282
            LM N    + + + + +I PA VL ++ S T + GSS+  +     + + A N+G++GF+
Sbjct: 1066 LMGNCEDIVSNCDNISTIKPAEVLIRSASETHSPGSSSVLVAYFDGQALHAANVGNTGFI 1125

Query: 283  VVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFDNL 342
            ++R GS    S    H F+F   +  G+  D     + +   ++ GD+IV GT+GLFDNL
Sbjct: 1126 IIRHGSIFKTSNAMFHEFSFPIHIVKGD--DHSEIIEEYKIDLNDGDMIVFGTNGLFDNL 1183

Query: 343  YNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAGFR-YYGGKL 401
            Y  E+ + V  + +  L PQ  A+ +A  A++    R+ ++PF  AAQ  G+  Y GGKL
Sbjct: 1184 YEKEIASTVSKSLQFSLKPQEIAEILATTAQEVGRSRSTRSPFGDAAQALGYVGYAGGKL 1243

Query: 402  DDITVVVSYVMSS 414
            DD+TV+VS V ++
Sbjct: 1244 DDVTVIVSLVQTT 1256


>IMGA|Medtr3g033950.1 Protein phosphatase 2C-like
           chr03_pseudomolecule_IMGAG_V3 9249622-9245558 F
           EGN_Mt090430 20090702
          Length = 309

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 149/297 (50%), Gaps = 22/297 (7%)

Query: 131 FHTLSSAKLSAGAARDVSFDGNSREEQLGNSTMVSGQTLKLLSGSCYLPHPDKEETGGED 190
            H +SS   +A   + V F  +   E    + ++    +    G+C +PHP K E GGED
Sbjct: 22  IHYISSIDENAKRRKRVVFSSSHSSEL---NPVIRSSEVSFSFGTCLIPHPKKVEKGGED 78

Query: 191 AHFIC-ADEQXXXXXXXXXXXXXXXXNAGLYSRELMSNSVSAIKDEPVGSIDPARVLEKA 249
           A F+   +                  +  L+ RELM+N+ + ++DE V + DP  ++ KA
Sbjct: 79  AFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNN-DPQILIRKA 137

Query: 250 HSNTKAKGSSTACIVALTNEG-IRAINLGDSGFMVVRDGSTVFQSPVQQHGFNFTYQLES 308
           H+ T + GS+T  +  L   G ++  N+GD G  V+R+G  +F +  Q+H F+  YQL S
Sbjct: 138 HAATFSTGSATVIVAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSS 197

Query: 309 GNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFDNLYNNEVTAAVVHAARAGLGPQATAQKI 368
              G     + V    +  GD IV G+DGLFDN++++E+   V     A       A+ +
Sbjct: 198 ERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNVFDHEIALTV-----ANKEVSEAAKAL 252

Query: 369 ADLARQRALDRNRQTPFSAAAQDAGF-----------RYYGGKLDDITVVVSYVMSS 414
           A+LA   ++D N  +P+S  A+  GF           +  GGKLDDITVVV  V++S
Sbjct: 253 ANLANSHSMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVVVGQVVNS 309