Jatropha Genome Database

JcCB0004221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004221.20 + phase: 0 
         (115 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g135890.1 Ribosomal protein L10; Ribosomal protein 60...   164   1e-41
IMGA|Medtr5g089540.1 Ribosomal protein L10; Ribosomal protein 60...   159   3e-40
IMGA|Medtr7g022380.1 60S acidic ribosomal protein P0, putative c...   111   1e-25
IMGA|Medtr7g138560.1 Ribosomal protein L10; TonB box, N-terminal...    96   6e-21

>IMGA|Medtr3g135890.1 Ribosomal protein L10; Ribosomal protein 60S
           chr03_pseudomolecule_IMGAG_V3 34138775-34136217 F
           EGN_Mt090430 20090702
          Length = 323

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 91/110 (82%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA+KPTKA+KK  YD KLC+L+DEY+QILVV ADNVGS QLQ+IR+GLRGDS+VLMGKNT
Sbjct: 1   MAVKPTKAEKKQNYDAKLCQLIDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           MMKRS+++HAEKTGN+AF +            FTKGDLKEV EE+AKYKV
Sbjct: 61  MMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKV 110


>IMGA|Medtr5g089540.1 Ribosomal protein L10; Ribosomal protein 60S
           chr05_pseudomolecule_IMGAG_V3 34824226-34821326 F
           EGN_Mt090430 20090702
          Length = 323

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 89/110 (80%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA KPTKA+KK  YD KLC+LLDE++QIL+V ADNVGS QLQ+IR GLRGDS+VLMGKNT
Sbjct: 1   MAPKPTKAEKKQAYDVKLCQLLDEFTQILIVNADNVGSKQLQNIRGGLRGDSVVLMGKNT 60

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           MMKRS+++HAEKTGN+AF +            FTKGDLKEV EE+AKYKV
Sbjct: 61  MMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKV 110


>IMGA|Medtr7g022380.1 60S acidic ribosomal protein P0, putative
           chr07_pseudomolecule_IMGAG_V3 5566430-5567395 E
           EGN_Mt090430 20090702
          Length = 188

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 11  KTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNTMMKRSIKLHA 70
           K  YD K+ +LL EY+Q+LVV +DNVGSNQLQ IRR L  DS+V+MGKN++MKRSI   A
Sbjct: 7   KAAYDAKMGKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKRSIIQAA 66

Query: 71  EKTGND-AFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKVI 111
           EKTGN  AF +            FTKGDL++V E IAK KV+
Sbjct: 67  EKTGNSHAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVV 108


>IMGA|Medtr7g138560.1 Ribosomal protein L10; TonB box, N-terminal
          chr07_pseudomolecule_IMGAG_V3 32913131-32913421 E
          EGN_Mt090430 20090702
          Length = 96

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 11 KTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNTMMKRSIKLHA 70
          K+ Y  K+ +LL EY+Q+LVV +DNVGSNQLQ IRR L  DS+V+MGKN++MK SI   A
Sbjct: 7  KSAYYAKMAKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKHSINQAA 66

Query: 71 EKTG-NDAFNSXXXXXXXXXXXXFTKGDL 98
          EKTG NDAF +            FTKGDL
Sbjct: 67 EKTGNNDAFLNLGPLLVGNFALIFTKGDL 95