Jatropha Genome Database

JcCB0004021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004021.20 - phase: 0 
         (204 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g012280.2 pentatricopeptide repeat-containing protein...   280   2e-76
IMGA|Medtr5g012280.1 pentatricopeptide repeat-containing protein...   280   2e-76

>IMGA|Medtr5g012280.2 pentatricopeptide repeat-containing protein
           {Ara, related chr05_pseudomolecule_IMGAG_V3
           3461426-3466340 E EGN_Mt090430 20090702
          Length = 274

 Score =  280 bits (717), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 147/169 (86%)

Query: 9   DSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMGTY 68
           DSKEA+YGALDAWVAWE+ FPIGS+R  LL LEKEQQWHR+VQVIKWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 69  GQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKGLE 128
           GQLIRALDMDHR  EAH FW  KIGTDLHSVPW+LC LM+S+YYRNNMLE LV+LFKGLE
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 129 AFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKK 177
           AFDRKP +K I+QKVANAYEMLG++EEK+RV +KY HLF+   +   KK
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKYSHLFTIKEERPTKK 250


>IMGA|Medtr5g012280.1 pentatricopeptide repeat-containing protein
           {Ara, related chr05_pseudomolecule_IMGAG_V3
           3461426-3466471 E EGN_Mt090430 20090702
          Length = 316

 Score =  280 bits (717), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 147/169 (86%)

Query: 9   DSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMGTY 68
           DSKEA+YGALDAWVAWE+ FPIGS+R  LL LEKEQQWHR+VQVIKWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 69  GQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKGLE 128
           GQLIRALDMDHR  EAH FW  KIGTDLHSVPW+LC LM+S+YYRNNMLE LV+LFKGLE
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 129 AFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKK 177
           AFDRKP +K I+QKVANAYEMLG++EEK+RV +KY HLF+   +   KK
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKYSHLFTIKEERPTKK 250