Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g048030.1 Protein of unknown function DUF1675 chr05_p...    96   1e-20

>IMGA|Medtr5g048030.1 Protein of unknown function DUF1675
           chr05_pseudomolecule_IMGAG_V3 20286627-20291321 E
           EGN_Mt090430 20090702
          Length = 397

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 32/152 (21%)

Query: 27  INRYPRDLLQRFMSTET--------------------------QQQKTPSSXXXXXXXXX 60
           +++YPRDLL+RF  + T                          + Q+             
Sbjct: 1   MDKYPRDLLERFFVSTTTTTTITQTQQIQNTQHHQHQYRQYLRENQEEEDEEEEEDEGIE 60

Query: 61  LNLGLSLGGRFGVDKSA--KKLTRSSSIAGSIPLAREHDA----FNTPPLSYPVLMRTSS 114
           LNLGLSLGGRFGVDK A  KKLTRSSS+ G++PL RE  A      +P  +YP L+R+SS
Sbjct: 61  LNLGLSLGGRFGVDKHANNKKLTRSSSVVGTMPLLREDIAAAAGVASPTPAYPTLIRSSS 120

Query: 115 LPXXXXXXXXXXXXMQSLRRLEAKRRRSEKQK 146
           LP            +Q+LRR+EAKRRRSEKQ+
Sbjct: 121 LPTETEEEWRKRKELQTLRRMEAKRRRSEKQR 152