Jatropha Genome Database

JcCB0003421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003421.20 + phase: 1 /TE/pseudo/partial
         (383 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    51   9e-07
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    48   8e-06

>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
           EGN_Mt090430 20090702
          Length = 1414

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 18/124 (14%)

Query: 116 QEDKPLATYFMEFKKIYEELNVLLPFS----------ADDKVQQTQREQMAIMSFLARLS 165
           Q  K +  YF E K ++EEL+   P               ++ +T R +  IM FL  L+
Sbjct: 133 QGAKTVLDYFTEMKSLWEELSSHRPIPNCVCVHQCRCLASRIAKTHRNEDQIMQFLTSLN 192

Query: 166 PVFETAKSQILSSSDIASLHNTFTQGLHTEGSHKSLPSVNSA--------LADRKQGQRR 217
             F   ++Q+L    + SL+  ++  +  E +H SLPS++ A          D ++ QRR
Sbjct: 193 DQFSVVRTQVLLLDPLPSLNKVYSLVVQEESNHASLPSLSVADDTSIQINATDTRRFQRR 252

Query: 218 KQPY 221
            + Y
Sbjct: 253 GKSY 256


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
           EGN_Mt090430 20090702
          Length = 1275

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 116 QEDKPLATYFMEFKKIYEELNVLLPFS----------ADDKVQQTQREQMAIMSFLARLS 165
           Q  K +  YF E K ++EE +  LP               +V +T R +  IM FL  L+
Sbjct: 137 QGTKSVLDYFTELKGLWEEFSSHLPIPNCICVHPCRCEATRVAKTHRTEDQIMQFLTGLN 196

Query: 166 PVFETAKSQILSSSDIASLHNTFTQGLHTEGSHKSLPSV 204
             F   K+QIL    + SL+  ++  +  E ++ S+PSV
Sbjct: 197 DQFSVVKTQILLLDPLPSLNKVYSMVIQEESNNSSIPSV 235