Jatropha Genome Database

JcCB0003261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003261.20 - phase: 0 
         (441 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g022480.1 3-dehydroquinate synthase chr05_pseudomolec...   637   0.0  
IMGA|Medtr5g022480.2 3-dehydroquinate synthase chr05_pseudomolec...   265   3e-71
IMGA|Medtr5g022480.3 3-dehydroquinate synthase chr05_pseudomolec...   153   1e-37

>IMGA|Medtr5g022480.1 3-dehydroquinate synthase
           chr05_pseudomolecule_IMGAG_V3 8765278-8769736 F
           EGN_Mt090430 20090702
          Length = 377

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/377 (80%), Positives = 326/377 (86%)

Query: 65  MDQSVGEASSKAPTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNTVAPI 124
           MD    +     PTIV VDLGNRSYPIYIGSGLL++PELLQRHVHGK+VL+VTN TVAP+
Sbjct: 1   MDPFSAKIQPGVPTIVNVDLGNRSYPIYIGSGLLNKPELLQRHVHGKKVLIVTNTTVAPL 60

Query: 125 YLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVALGGGV 184
           YLD+VVDALT GNPNVSVESVILPDGE+YK+M+TLMKVFDKAIESRLDRRCTFVALGGGV
Sbjct: 61  YLDKVVDALTSGNPNVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRCTFVALGGGV 120

Query: 185 IGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLID 244
           IGDMCG+AAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINH LGKNLIGAFYQPQCVLID
Sbjct: 121 IGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLID 180

Query: 245 TDTLNTLPNRELASGLAEVVKYGLIRDAEFFEWQEKNMPKLMARDPDALAYAIKRSCENK 304
           TDTL+TLP RELASG AEV+KYGLIRD EFFEWQEKNM  LMARDP+ALAYAIKRSCENK
Sbjct: 181 TDTLDTLPERELASGFAEVIKYGLIRDTEFFEWQEKNMQALMARDPNALAYAIKRSCENK 240

Query: 305 AEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWID 364
           AEVVSLDE+E G+RATLNLGHTFGHAIET  GYGQWLHGE            SYRLGWID
Sbjct: 241 AEVVSLDEREGGVRATLNLGHTFGHAIETSVGYGQWLHGEAVAAGTVMAVDMSYRLGWID 300

Query: 365 DSIVKRVHNILQQAKLPTAPPDTMTVEMFKSVMAVDKKVADXXXXXXXXXXXXXNCVFTG 424
           DSIVKRV +IL+Q KLP  PP+ MTV+MFKSVMAVDKKVAD             NCVFTG
Sbjct: 301 DSIVKRVSDILKQTKLPIVPPEMMTVDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTG 360

Query: 425 DYDRKALDDTLRAFCKS 441
           DYDRKALDDTL+AFCKS
Sbjct: 361 DYDRKALDDTLQAFCKS 377


>IMGA|Medtr5g022480.2 3-dehydroquinate synthase
           chr05_pseudomolecule_IMGAG_V3 8765278-8767416 F
           EGN_Mt090430 20090702
          Length = 154

 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 138/151 (91%)

Query: 65  MDQSVGEASSKAPTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNTVAPI 124
           MD    +     PTIV VDLGNRSYPIYIGSGLL++PELLQRHVHGK+VL+VTN TVAP+
Sbjct: 1   MDPFSAKIQPGVPTIVNVDLGNRSYPIYIGSGLLNKPELLQRHVHGKKVLIVTNTTVAPL 60

Query: 125 YLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVALGGGV 184
           YLD+VVDALT GNPNVSVESVILPDGE+YK+M+TLMKVFDKAIESRLDRRCTFVALGGGV
Sbjct: 61  YLDKVVDALTSGNPNVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRCTFVALGGGV 120

Query: 185 IGDMCGYAAASFLRGVNFIQIPTTVMAQVDS 215
           IGDMCG+AAASFLRGVNFIQIPTTVMAQV S
Sbjct: 121 IGDMCGFAAASFLRGVNFIQIPTTVMAQVLS 151


>IMGA|Medtr5g022480.3 3-dehydroquinate synthase
           chr05_pseudomolecule_IMGAG_V3 8765278-8767497 F
           EGN_Mt090430 20090702
          Length = 112

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 84/100 (84%)

Query: 65  MDQSVGEASSKAPTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNTVAPI 124
           MD    +     PTIV VDLGNRSYPIYIGSGLL++PELLQRHVHGK+VL+VTN TVAP+
Sbjct: 1   MDPFSAKIQPGVPTIVNVDLGNRSYPIYIGSGLLNKPELLQRHVHGKKVLIVTNTTVAPL 60

Query: 125 YLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFD 164
           YLD+VVDALT GNPNVSVESVILPDGE+YK+M  L  VF+
Sbjct: 61  YLDKVVDALTSGNPNVSVESVILPDGEQYKDMVGLYFVFE 100