Jatropha Genome Database

JcCB0003071.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003071.30 - phase: 0 
         (398 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g104320.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG...   146   2e-35
IMGA|Medtr8g086620.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG...    52   5e-07
IMGA|Medtr5g025810.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG...    52   7e-07

>IMGA|Medtr5g104320.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3
           41827212-41826484 E EGN_Mt090430 20090702
          Length = 238

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 2/211 (0%)

Query: 190 RQQHDHRSRH-RPLG-LRAPAPQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPR 247
           + QH  R+R  R L  L+    QKT+PI W  A LC IF                  +P 
Sbjct: 28  KNQHPLRTRSSRKLAILKVDDQQKTKPIVWFAAILCFIFSFTLIFFGIATIICYLTLKPS 87

Query: 248 NPRFEVSSVTLNAAYIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQ 307
           NP F++S+ +LN  Y D+    N D +L ANF+NPN+KV V F  + I L+Y N +IA+Q
Sbjct: 88  NPLFDISNASLNVVYFDSKQYFNGDFALQANFSNPNRKVHVKFESLYIQLFYSNRVIASQ 147

Query: 308 YIESFSTPKTESRFANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNLGIF 367
            I+ F+    E+R+  +  IS+ + +P    V+LQ ++  N +    KG+FKV+ N+ I 
Sbjct: 148 SIKPFTQKPKETRYETVRFISTLLFMPQEVGVRLQRELQNNRLSCYAKGTFKVKVNMWIL 207

Query: 368 RYSYRLYGHCKIMVTAPPSGVLRATRCTTKR 398
             S+ L+  C+I +T PP+G L A +C T R
Sbjct: 208 HSSFWLHSVCQIEMTGPPNGSLVARQCITTR 238


>IMGA|Medtr8g086620.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG_V3
           17789812-17788310 H EGN_Mt090430 20090702
          Length = 190

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 4/170 (2%)

Query: 204 LRAPAPQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAAYI 263
           L   +   T+P  WL A +C IF                   PR P   V++  L+    
Sbjct: 8   LEVASVGHTKPFVWLAAIICTIFAIAVTITGIVVFIGYILIHPRAPIISVTNAHLDLLRN 67

Query: 264 DADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFSTPKTESRFAN 323
           D   LL   +S++    N N K    F+ +   L +    IA    +SF  PK  +   +
Sbjct: 68  DHAGLLQTQLSIVVTAYNGNAKAHATFSKITFSLSFQGQGIAMLVADSFDVPKNSTN--D 125

Query: 324 IHMISSQVRLPLG-DSV-QLQNQISKNGVIFDVKGSFKVRSNLGIFRYSY 371
           +  +     +PL  D + ++     +N + FD KG+ + R  +G FR  +
Sbjct: 126 LRYVVQSSSIPLTPDQIDKIDESWKRNEIGFDFKGAARTRWRIGPFRSEW 175


>IMGA|Medtr5g025810.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3
           10368781-10368080 H EGN_Mt090430 20090702
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 8/208 (3%)

Query: 195 HRSRHRPLGLRAPAPQK--TRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFE 252
           H+ RHR    R    Q   T    WL A LC I                    PR P   
Sbjct: 27  HQLRHRTPKKRLVTHQNGNTNIFIWLLAILCTIIAIGVVIGGVVVFIGYIVIHPRVPTIS 86

Query: 253 VSSVTLNAAYIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESF 312
           +++  L+    D   LL   +++     N N K    F+++ + L Y    IA    + F
Sbjct: 87  IANAHLDLFRNDYAGLLQTQVNIRVMAKNGNFKAHATFSNIKLKLSYEGQGIAFMVADPF 146

Query: 313 STPKTESRFANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNL---GIFRY 369
             PK  SR+ +  + SS + L       + +   +N V FD+KG  + +  +   G F++
Sbjct: 147 DVPKNSSRYLDYVVQSSSIPLTPDQIEDVDDTWKRNIVGFDLKGDARTQWRIGPFGSFKF 206

Query: 370 SYRLYGHCKIMVTAPPSGVLRATRCTTK 397
             +L    K     P +G    +RCT++
Sbjct: 207 GCKLECQLKF---HPLNGSYIPSRCTSQ 231