Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0002291.10 - phase: 0 /partial
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g159520.1 Protein of unknown function UPF0044 chr04_p...    92   2e-19

>IMGA|Medtr4g159520.1 Protein of unknown function UPF0044
           chr04_pseudomolecule_IMGAG_V3 40260003-40255331 E
           EGN_Mt090430 20090702
          Length = 698

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 5/77 (6%)

Query: 112 PKTHPAFRRVSTRITQPKDDESPIERN-ANIKLSEDGLSYVVNGAPFEFKYSYTESPKVK 170
           P++HPA +  +     PK    P+ +   N+K+SEDG+SYV+ GAPFEFKYSYTE+PK K
Sbjct: 38  PQSHPALKFSNI----PKQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKSK 93

Query: 171 PLKLREPPFSPFGPTTM 187
           P+++REPPF PFGP TM
Sbjct: 94  PVQMREPPFVPFGPVTM 110