Jatropha Genome Database

JcCB0001411.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.50 - phase: 0 /pseudo/partial
         (196 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold; Rhodane...   171   2e-43
IMGA|Medtr5g096440.1 PpiC-type peptidyl-prolyl cis-trans isomera...    55   3e-08
IMGA|Medtr5g096430.1 PpiC-type peptidyl-prolyl cis-trans isomera...    51   4e-07

>IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold;
           Rhodanese-like chr05_pseudomolecule_IMGAG_V3
           40405967-40401475 E EGN_Mt090430 20090702
          Length = 465

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 98/125 (78%), Gaps = 1/125 (0%)

Query: 73  LLSAGSRITCKDFNEKVVKGEAHVLVDVRPAHHFKIVALPNALNIPLTSLEARLPEISSA 132
           LL + SRI+  ++ E  +  E HVLVDVRPAHHFKIV+LPN+LNIP ++LE+RLPEISS 
Sbjct: 341 LLPSESRISSMEYKEITLNKEPHVLVDVRPAHHFKIVSLPNSLNIPFSTLESRLPEISSI 400

Query: 133 LK-EAGGCRGTESESGVSLYIVCRRGNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDP 191
           LK +    +G  SES   LY+VCRRGNDSQRAVQ LH  GFTSAKDI+GGLE+W+ +VDP
Sbjct: 401 LKKDEEEEKGAVSESSAQLYVVCRRGNDSQRAVQYLHKMGFTSAKDIVGGLESWAQNVDP 460

Query: 192 KFPTY 196
            FPTY
Sbjct: 461 NFPTY 465


>IMGA|Medtr5g096440.1 PpiC-type peptidyl-prolyl cis-trans isomerase;
           Rhodanese-like chr05_pseudomolecule_IMGAG_V3
           38318846-38315244 E EGN_Mt090430 20090702
          Length = 323

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 97  LVDVRPAHHFKIVALPNALNIPLTSLEARLPEISSALKEAGGCRGTESESGVSLYIVCRR 156
           L+DVR        +LP  + +PL      +PEI++ L           +   + Y++C  
Sbjct: 205 LIDVREPEEVDKASLPGFMVLPLLQFGTWVPEINTKL-----------DLQKNTYVLCHH 253

Query: 157 GNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDPKFPTY 196
           G  S +  + L S+GF    +I GG+ A++  VDP  PTY
Sbjct: 254 GIRSLKVARWLQSQGFRKIYNISGGINAYAVQVDPSIPTY 293


>IMGA|Medtr5g096430.1 PpiC-type peptidyl-prolyl cis-trans isomerase;
           Rhodanese-like chr05_pseudomolecule_IMGAG_V3
           38313275-38308311 E EGN_Mt090430 20090702
          Length = 291

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 93  EAHVLVDVRPAHHFKIVALPNALNIPLTSLEARLPEISSALKEAGGCRGTESESGVSLYI 152
           E   L+DVR        +LP    +PL       PEI+S             +     Y+
Sbjct: 199 EEAQLIDVREPEEVTTASLPGFTVLPLRQFGTWGPEINSKF-----------DLQKDTYV 247

Query: 153 VCRRGNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDPKFPTY 196
           +C  G  S +  + L S+GF    +I GG+ A++  VDP  PTY
Sbjct: 248 LCHHGVRSLQVARWLQSQGFRKVYNISGGIHAYAVKVDPSVPTY 291