Jatropha Genome Database

JcCB0001411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.30 + phase: 0 /partial
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g014270.1 CD9/CD37/CD63 antigen chr05_pseudomolecule_...   130   7e-31
IMGA|Medtr5g014270.2 CD9/CD37/CD63 antigen chr05_pseudomolecule_...   128   3e-30
IMGA|Medtr4g024120.1 CD9/CD37/CD63 antigen chr04_pseudomolecule_...    94   6e-20

>IMGA|Medtr5g014270.1 CD9/CD37/CD63 antigen
           chr05_pseudomolecule_IMGAG_V3 4521102-4527895 E
           EGN_Mt090430 20090702
          Length = 289

 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 27/217 (12%)

Query: 25  AIEFYGIFCLVNWKNDRESHSHNNSKKYE-----------QIALPRALLAIEASSWLSNR 73
           AI  YGI+ LV +    +    + S   +           Q   P  L+A+  S  + ++
Sbjct: 25  AIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSALIQFGRP-MLMAVSLSDNIFDK 83

Query: 74  LPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFN 133
           LP AWFIYL + +GA L V+SCFGC+GA TR+ CCL  YS+L+ LL + +L  AAF+FF+
Sbjct: 84  LPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICYSILVALLILVELGCAAFLFFD 143

Query: 134 HNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE 193
            + ++++P D++G F+  Y F   NW I+RWV +  +  + +  ++AL +R  NR  DY+
Sbjct: 144 KSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRPADYD 203

Query: 194 RIVYPEIVRPTAEKR-------------GNPVAAATS 217
                E++ P  + R             G PVA  T 
Sbjct: 204 S--DDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTD 238


>IMGA|Medtr5g014270.2 CD9/CD37/CD63 antigen
           chr05_pseudomolecule_IMGAG_V3 4521102-4527895 E
           EGN_Mt090430 20090702
          Length = 220

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 11/168 (6%)

Query: 61  LLAIEASSWLSNRLPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLF 120
           L+A+  S  + ++LP AWFIYL + +GA L V+SCFGC+GA TR+ CCL  YS+L+ LL 
Sbjct: 2   LMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICYSILVALLI 61

Query: 121 IAQLVAAAFMFFNHNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVA 180
           + +L  AAF+FF+ + ++++P D++G F+  Y F   NW I+RWV +  +  + +  ++A
Sbjct: 62  LVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLA 121

Query: 181 LYLRYANRVNDY---ERIVYP--EIVRPTAEKR------GNPVAAATS 217
           L +R  NR  DY   + ++ P  ++ +P    R      G PVA  T 
Sbjct: 122 LIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTD 169


>IMGA|Medtr4g024120.1 CD9/CD37/CD63 antigen
           chr04_pseudomolecule_IMGAG_V3 5459731-5458057 H
           EGN_Mt090430 20090702
          Length = 283

 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 22/159 (13%)

Query: 29  YGIFCLVNWKNDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLLVIGA 88
           YG+ C   WK    + SH            R LLA ++       LP A FIY+++ IGA
Sbjct: 28  YGLACFFKWKQTLPNGSH------------RLLLAQQSQE----TLPKALFIYVMIGIGA 71

Query: 89  SLIVISCFGCVGAATRSSCCLCT---YSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDRS 145
            L++ISC G +G A RS CCL T   Y V LV L I +L  A F+FF+H R++ +P D +
Sbjct: 72  ILLIISCVGYIGTALRSPCCLLTIFQYCVFLVPLIIVELGIALFIFFDH-RKQVIPKDVN 130

Query: 146 GSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR 184
                 Y FF  +WKI RW+ +    L++I L++A+YLR
Sbjct: 131 EDI--IYNFFNDHWKIFRWIALGEFILQIIALILAIYLR 167