Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.20 + phase: 0 
         (78 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g083510.1 Cytochrome b-c1 complex subunit 8 (exp=-1; ...    88   9e-19

>IMGA|Medtr5g083510.1 Cytochrome b-c1 complex subunit 8 (exp=-1;
          wgp=-1; cg=-1; clo, putative
          chr05_pseudomolecule_IMGAG_V3 31712699-31708451 F
          EGN_Mt090430 20090702
          Length = 72

 Score = 88.2 bits (217), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 45/51 (88%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGK  V +K+VVYALSPFQQKIMPGLWKDLP KIHHKVSENWISA LL+ P
Sbjct: 1  MGKNIVPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISALLLVVP 51