Jatropha Genome Database

JcCB0000571.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.50 - phase: 0 /pseudo/partial
         (181 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g147870.1 Cyclin-like F-box; F-box protein interactio...    56   1e-08
IMGA|Medtr1g068640.1 Cyclin-like F-box; F-box protein interactio...    54   4e-08
IMGA|Medtr1g068390.1 Cyclin-like F-box; F-box protein interactio...    54   4e-08
IMGA|Medtr4g022770.1 Ribosomal protein S14 chr04_pseudomolecule_...    52   2e-07
IMGA|Medtr3g008590.1 Cyclin-like F-box; F-box protein interactio...    49   2e-06
IMGA|Medtr3g008640.1 Cyclin-like F-box; F-box protein interactio...    49   2e-06
IMGA|Medtr2g033620.1 Cyclin-like F-box; F-box protein interactio...    48   2e-06
IMGA|Medtr4g160910.1 Cyclin-like F-box; F-box protein interactio...    46   8e-06

>IMGA|Medtr8g147870.1 Cyclin-like F-box; F-box protein interaction
           domain chr08_pseudomolecule_IMGAG_V3 36488278-36486163 E
           EGN_Mt090430 20090702
          Length = 425

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSIT 68
           FV+GA+HW+  +      R+  I+ FDLR EVF E+ LP + V    D  V +     + 
Sbjct: 203 FVSGALHWVVTRDLEPESRDL-IVAFDLRFEVFREVALPGT-VDGKFDMDVALL-RGMLC 259

Query: 69  VIHKKDKKMSVVCVMKNYGVVASWVMLGTVGKDWRGK----LRVLGFMSNGDVFL 119
           +I  +      V VM+ YG   SW  + TVG+    K    L+ LG+  NGD  L
Sbjct: 260 IIENRGSDGFDVWVMREYGSHDSWCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVL 314


>IMGA|Medtr1g068640.1 Cyclin-like F-box; F-box protein interaction
           domain chr01_pseudomolecule_IMGAG_V3 13738407-13742595 E
           EGN_Mt090430 20090702
          Length = 419

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 9   FVNGAMHWITYKSK-NNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSI 67
           FV+G ++WI  K+  N+N+R   I+  DL  E +GE++LPQ      CD  ++V      
Sbjct: 234 FVSGTLNWIVSKNAVNSNQR--VILSVDLEKETYGELLLPQHDGYRVCDPIMYVLSNCLC 291

Query: 68  TVIHKKDKKMSVVCVMKNYGVVASWVMLGTVGKD 101
                  +    V +MK YGV  SW +L  +  +
Sbjct: 292 VCSDNHSETHLAVWIMKEYGVAESWTILTIISHE 325


>IMGA|Medtr1g068390.1 Cyclin-like F-box; F-box protein interaction
           domain chr01_pseudomolecule_IMGAG_V3 13607246-13611434 E
           EGN_Mt090430 20090702
          Length = 419

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 9   FVNGAMHWITYKSK-NNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSI 67
           FV+G ++WI  K+  N+N+R   I+  DL  E +GE++LPQ      CD  ++V      
Sbjct: 234 FVSGTLNWIVSKNAVNSNQR--VILSVDLEKETYGELLLPQHDGYRVCDPIMYVLSNCLC 291

Query: 68  TVIHKKDKKMSVVCVMKNYGVVASWVMLGTVGKD 101
                  +    V +MK YGV  SW +L  +  +
Sbjct: 292 VCSDNHSETHLAVWIMKEYGVAESWTILTIISHE 325


>IMGA|Medtr4g022770.1 Ribosomal protein S14
          chr04_pseudomolecule_IMGAG_V3 4746135-4749433 H
          EGN_Mt090430 20090702
          Length = 500

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 9  FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDF--KVHVFGESS 66
          FV  + HW+T    +N  +   I+ F+L  E+F E+ LP+ L  +S DF   + + G+S 
Sbjct: 4  FVENSFHWVTIHELDNFHQPALIVAFNLAQEIFNEVPLPEILASTSQDFGTNLSLLGQSL 63

Query: 67 ITVIHKKDKKMSV----VCVMKNYGVVASWVMLGTV 98
            ++  ++         V VMK YG   SW +L T+
Sbjct: 64 CMLLRYQNMNNKTTKVDVWVMKEYGFRDSWCVLFTL 99


>IMGA|Medtr3g008590.1 Cyclin-like F-box; F-box protein interaction
           domain chr03_pseudomolecule_IMGAG_V3 1055110-1061099 H
           EGN_Mt090430 20090702
          Length = 405

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 10  VNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSITV 69
           V+G ++W+   SK++ + ++FI+  DL +E + E+ LP    + +C+F + V  +  I  
Sbjct: 258 VSGTINWLA--SKDSKQSKYFILSLDLMNESYQEVSLPNYGKVDACNFHLSVLRDCLIMF 315

Query: 70  IHKKDKKMSVVCVMKNYGVVASWVMLGTVG 99
                    VV VMK YG   SW  L T+ 
Sbjct: 316 ------SGDVVWVMKEYGNKESWTKLFTIS 339


>IMGA|Medtr3g008640.1 Cyclin-like F-box; F-box protein interaction
           domain chr03_pseudomolecule_IMGAG_V3 1072288-1073505 H
           EGN_Mt090430 20090702
          Length = 405

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 10  VNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSITV 69
           V+G ++W+   SK++ + ++FI+  DL +E + E+ LP    + +C+F + V  +  I  
Sbjct: 258 VSGTINWLA--SKDSKQSKYFILSLDLMNESYQEVSLPNYGKVDACNFHLSVLRDCLIMF 315

Query: 70  IHKKDKKMSVVCVMKNYGVVASWVMLGTVG 99
                    VV VMK YG   SW  L T+ 
Sbjct: 316 ------SGDVVWVMKEYGNKESWTKLFTIS 339


>IMGA|Medtr2g033620.1 Cyclin-like F-box; F-box protein interaction
           domain chr02_pseudomolecule_IMGAG_V3 9220925-9219069 E
           EGN_Mt090430 20090702
          Length = 388

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVH--VFGESS 66
           FV  ++HWI    K +  +   I  F+L  E+F E+ LP   +IS+  FK+   V G   
Sbjct: 209 FVENSLHWIM-TPKLDGLQPCLIAAFNLSLEIFNEVPLPDE-IISNESFKISIAVLGGCL 266

Query: 67  ITVIHKKDKKMSVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNG 115
              ++ +  K+ V  VMK YG   SW    T+ K     LR LG+ S+G
Sbjct: 267 CLPVNYQTTKIDV-WVMKEYGCRDSWCKHFTLVKSCLDFLRPLGYCSDG 314


>IMGA|Medtr4g160910.1 Cyclin-like F-box; F-box protein interaction
           domain chr04_pseudomolecule_IMGAG_V3 40924102-40922631 E
           EGN_Mt090430 20090702
          Length = 397

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSIT 68
           FV+G ++W+  K    N  +  I+ FDL  E F E++LPQ       +  ++V       
Sbjct: 241 FVSGTLNWLVNKRAGGNSSQRGILSFDLGKETFREVLLPQHDGYDVRNCGLYVLSNCLCV 300

Query: 69  VIHKKDKKMSVVCVMKNYGVVASWVML 95
                +K    V +M  YGV  SW  L
Sbjct: 301 CFDHSNKNHWGVWMMNQYGVTESWTKL 327