Jatropha Genome Database
- JcCB0000571.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0000571.10 + phase: 2 /TE/partial
(245 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 137 6e-33
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 134 4e-32
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 132 1e-31
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 130 5e-31
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 115 2e-26
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 115 2e-26
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 97 8e-21
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 91 5e-19
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 73 1e-13
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 71 5e-13
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 68 4e-12
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 63 2e-10
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 62 4e-10
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 59 2e-09
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 58 4e-09
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 52 2e-07
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 50 1e-06
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 49 2e-06
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 49 3e-06
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 48 4e-06
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 48 5e-06
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 47 8e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 119/214 (55%), Gaps = 4/214 (1%)
Query: 11 EKIP-YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVC 69
E IP Y +G L+Y L TRPDI + +S+FLS P H +A + RYL+
Sbjct: 1149 EDIPSYRRLIGRLLY-LNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKG 1207
Query: 70 LCFGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEF 128
L F P+ L GY+DAD AG +D+R+S SG +SW+++ Q V+ S++EAE+
Sbjct: 1208 LFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEY 1267
Query: 129 IALTEACKELLWMKKFLNELGIHQERY-LIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWI 187
AL A EL W+ L +L + + ++FCD+QSA+H+ N FH R+KH+++ H +
Sbjct: 1268 RALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIV 1327
Query: 188 RDVLEMKQLQLEKIHTDENGSDMLTKILPKDKFE 221
R+ L L+L + + E +D TK L F
Sbjct: 1328 REKLHSGILKLLPVSSKEQVADFFTKSLHPQPFN 1361
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 134/234 (57%), Gaps = 7/234 (2%)
Query: 13 IP-YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLC 71
IP Y +G L+Y L TRP I + +S+FL++P ++H+ A I RYL+ + L
Sbjct: 1168 IPSYRRLIGRLIY-LTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLF 1226
Query: 72 FGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIA 130
F + + L GY+DAD AG +DSR+S SG +SW+++ Q V+ S++EAE+ A
Sbjct: 1227 FPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRA 1286
Query: 131 LTEACKELLWMKKFLNELGIHQER-YLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRD 189
L A EL W+ L++L + + ++++CD+QSA+H+ N FH R+KH+++ H +R+
Sbjct: 1287 LGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVRE 1346
Query: 190 VLEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGMMESMANVPT*ACRG 243
L+ ++L + + + +D TK L F GM+ ++ + P AC G
Sbjct: 1347 KLQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGML-NIYHFP--ACAG 1397
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 11 EKIP-YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVC 69
+ IP Y VG L+Y L TRPDI +S+FLSNP H A RYL+
Sbjct: 1021 DDIPAYRRLVGRLLY-LNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKG 1079
Query: 70 LCFGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEF 128
L F + L G++DAD AG +D+RKS +G +SW+++ Q V+ S++EAE+
Sbjct: 1080 LFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEY 1139
Query: 129 IALTEACKELLWMKKFLNELGIH-QERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWI 187
AL A E+ W+ LN+L I + +++CD+QSA+H+ N FH R+KH+++ H +
Sbjct: 1140 RALASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIV 1199
Query: 188 RDVLEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGMME 231
R+ L+ L+L + + + +D TK L F G+++
Sbjct: 1200 REKLQAGVLKLLPVSSQDQIADFFTKALLPKTFSLLLSKLGLID 1243
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 4/202 (1%)
Query: 19 VGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGEEKPV 78
VG L+Y L TRPDI +S+FLS P + H +A + +YL+ L F +
Sbjct: 1184 VGRLLY-LNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSL 1242
Query: 79 -LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKE 137
L G++DAD AG +D+R+S SG +SW+++ Q V+ S++EAE+ AL A E
Sbjct: 1243 NLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCE 1302
Query: 138 LLWMKKFLNELGIHQERY-LIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQL 196
L W+ L +L + +++CD+QSAIH+ N FH R+KH+++ H IRD L+ L
Sbjct: 1303 LQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVL 1362
Query: 197 QLEKIHTDENGSDMLTK-ILPK 217
+L + + + +D TK +LPK
Sbjct: 1363 KLLTVSSQDQVADFFTKALLPK 1384
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 24/238 (10%)
Query: 1 PSTNGEKEEMEKIP-------YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWA 53
P +K ++K P Y + L+Y L P+I +SV +++
Sbjct: 80 PMEQNQKLVLDKGPTCSDPSRYRRLISRLIY-LTIMHPEITYSVHILTM----------- 127
Query: 54 AVKWIFRYLRGTTKVCLCFGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQ 112
+ RYL+ + + +E + LV Y D+D A +R+STSGYL+ +SW+
Sbjct: 128 ---RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWK 184
Query: 113 SRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGIHQER-YLIFCDSQSAIHLGKNS 171
++ Q V+ S++EAE+ A+ +A E++W++ L+ L +H + ++ CD+Q+A+HL N
Sbjct: 185 TKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMHLAANP 244
Query: 172 SFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGM 229
+H R+KHI+V H+IR L+ + + T + +D+ TK L +F+ G+
Sbjct: 245 VYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKALGAKQFQELTFKLGV 302
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 6/176 (3%)
Query: 19 VGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGE---- 74
+G L Y L +R DI++SVG+VS+F+SNP K H+ A K I RY+ GT + + F E
Sbjct: 379 IGLLRY-LCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQET 437
Query: 75 EKPVLVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEA 134
E+ ++ Y+DAD D R+ T+ +L G +SW S+ Q VALS+ E E++ + A
Sbjct: 438 EQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSA 497
Query: 135 CKELLWMKKFLNELGIHQERYL-IFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRD 189
+ W++ L + I ++ + + D++ AI+L KN H +SKHI+ ++H++RD
Sbjct: 498 ACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRD 553
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 4 NGEKEEMEKIP-YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYL 62
N E IP Y +G L+Y L TRPDI +S+FLS P + H A + +YL
Sbjct: 99 NDSSPPYEDIPSYRRLIGRLLY-LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYL 157
Query: 63 RGTTKVCLCFGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVAL 121
+ L F + L G++D D AG VDSR+S SG +SW+++ Q V+
Sbjct: 158 KCCPGKGLFFPRNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSR 217
Query: 122 STTEAEFIALTEACKELLWMKKFLNELGIHQERY-LIFCDSQS 163
S++EAE+ AL A EL W+ L +L I + ++FCD+Q+
Sbjct: 218 SSSEAEYRALASATCELQWILYLLKDLNIQSSKLPVLFCDNQN 260
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 36/221 (16%)
Query: 13 IP-YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLC 71
IP Y VG L+Y L TRPDI +S+FLS P + H+ A + RYL+ L
Sbjct: 518 IPAYRRLVGRLLY-LNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLH 576
Query: 72 FGEEK-PVLVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIA 130
F P + GY+DAD AG D+R+S SG +SW+++ Q V+ S++EAE+ A
Sbjct: 577 FPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRA 636
Query: 131 LTEACKELLWMKKFLNELGIHQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDV 190
L A N FH R+KH+++ H +R+
Sbjct: 637 LGAAT---------------------------------SNPVFHERTKHLEIDCHIVREK 663
Query: 191 LEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGMME 231
L ++L I + +D TK + F G+++
Sbjct: 664 LAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLVD 704
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 15 YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGE 74
Y +G L+Y L TRPDI+ + +S+F++ P H + RYL+ L F
Sbjct: 343 YRCLIGCLLY-LTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPR 401
Query: 75 EKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTE 133
+ L+G++DAD G VDSR+S +++Q + + + + +++
Sbjct: 402 TSEMQLLGFSDADWGGCVDSRRS------------LAFQEAIHRFLFFLRSGISCFSISH 449
Query: 134 ACKELLWMKKFLNELGIHQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLE 192
+ H +++CD+QSA+H+ N F+ R+KH+D+ H +R+ ++
Sbjct: 450 PRTPM-----------AHIRLSILYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQ 497
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 119 VALSTTEAEFIALTEACKELLWMKKFLNELGIH-QERYLIFCDSQSAIHLGKNSSFHSRS 177
V+ S++EAE+ A+ E+ W+ L + + L++CDSQSA H+ N+SFH R+
Sbjct: 249 VSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERT 308
Query: 178 KHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGM 229
KHI++ H +R+ L+ K L + + + +D+LTK P D + + +
Sbjct: 309 KHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTK--PLDPLPFSNFISKL 358
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 58 IFRYLRGTTKVCLCFGEEKPVLV-GYTDADMA-GDVDSRKSTSGYLITFAGGAVSWQSRL 115
+ YL+G L F + + + GYT+AD A G D+R+S S
Sbjct: 3 VLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSIS----------------- 45
Query: 116 QKCV-ALSTTEAEFIALTEACKELLWMKKFLNELGIH-QERYLIFCDSQSAIHLGKNSSF 173
++C S++EAE+ AL A EL + L +L ++ + +++CD+QSAI++ N F
Sbjct: 46 EQCFFCWSSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVF 105
Query: 174 HSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDKFEYCRLAAGMME 231
H +KH+++ H +R+ L+ +L I + + +D TK L F GM++
Sbjct: 106 HECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLD 163
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 73 GEEKPVLVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALT 132
GE K L GY+D+D GD R+STSG L F A+SW ++ Q ALS+ EAE+IA T
Sbjct: 9 GESK--LEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGT 66
Query: 133 EACKELLWMKKFLNELGIH 151
A + +W+ + EL
Sbjct: 67 FAACQAIWLDNVIKELNCE 85
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 89 GDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNEL 148
GD D +KST+ YL +SW S+ Q VALS++EA+++A + A + LW++ L EL
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 149 GIHQ-ERYLIFCDSQSAIHLGKNSSFHSR 176
+ +R + D++ AI L H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 6 EKEEMEKIPYASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGT 65
E E ++ + +GSL Y L +RP I++ VG+VSRF+SNP K ++ + K I RY+ T
Sbjct: 48 EDEGVDPTMFRRLIGSLRY-LCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINST 106
Query: 66 TKVCLCF----GEEKPVLVGYTDAD 86
+ + F E+ + GY+DAD
Sbjct: 107 LQYGILFLVVQATEQLDMEGYSDAD 131
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 160 DSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDK 219
D++SAI+L KNS FH + KH++ R+H++RD + +L +E T + +D+ TK L +D+
Sbjct: 17 DNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTKALKRDQ 76
Query: 220 FEYCR 224
F R
Sbjct: 77 FLKLR 81
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 130 ALTEACKELLWMKKFLNELGI-HQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIR 188
AL +A E W+ FL++ I H +I+CD+ S++H+ N FH R+KHI++ H +R
Sbjct: 3 ALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVR 62
Query: 189 D 189
D
Sbjct: 63 D 63
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 58 IFRYLRGTTKVCLCFGEEKPV------LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSW 111
+ R+L+GT L +P+ ++ Y DAD D D R + + +SW
Sbjct: 119 VLRHLKGTLSWGLLV---RPIPTYPLSILAYCDADWGSDPDDRSVDA--CVFLGPNLISW 173
Query: 112 QSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGIHQERYLI 157
++ Q +A S+TEAE+ +L A ELLW+K + L + Q++ +
Sbjct: 174 WAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKVIQKKLFV 219
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 7 KEEMEKIPYASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTT 66
KE ++ + +G L Y L TRPD+A S+G++S+F+ N G H AVK + Y++G
Sbjct: 23 KENVDFTQFRMLIGCLRY-LCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKV 81
Query: 67 KVCLCFGEE 75
+ + F
Sbjct: 82 EHAILFSNN 90
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 160 DSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDK 219
D++S I+L KN RSKHI R+H+IR+ + + +++E T+ D TK D+
Sbjct: 17 DNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQLGDGFTKAFKIDR 76
Query: 220 FEYCRLAAGMME 231
F R G++E
Sbjct: 77 FTCLRDKLGLIE 88
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 159 CDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTK 213
D+ S I+L KN H RSKHI++R+H++R+ + +L+LE ++ +D+LTK
Sbjct: 29 IDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 83
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 159 CDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTK 213
D+ S I+L KN H RSKHI++R+H++R+ + +L+LE ++ +D+LTK
Sbjct: 120 IDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 174
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 137 ELLWMKKFLNELGI-HQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWI---RDVLE 192
EL W+K L +L I H+ L+ C+SQ+A+H+ K FH R+K+I V H+I LE
Sbjct: 7 ELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFIYLFTKALE 66
Query: 193 MKQLQ 197
Q Q
Sbjct: 67 RHQFQ 71