Jatropha Genome Database
- JcCA0317991.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317991.20 + phase: 0
(329 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g133290.1 AAA ATPase; Rad51, N-terminal chr08_pseudom... 579 e-166
IMGA|Medtr4g025950.1 RecA bacterial DNA recombination protein ch... 105 4e-23
IMGA|Medtr4g025760.1 RecA bacterial DNA recombination protein ch... 105 4e-23
IMGA|Medtr8g116460.1 RecA bacterial DNA recombination protein ch... 105 4e-23
IMGA|Medtr8g116050.1 RecA bacterial DNA recombination protein ch... 105 4e-23
IMGA|Medtr5g098850.1 RecA bacterial DNA recombination protein; O... 97 1e-20
IMGA|Medtr2g111540.1 RecA bacterial DNA recombination protein ch... 61 6e-10
IMGA|Medtr5g045260.1 Rad51, N-terminal chr05_pseudomolecule_IMGA... 51 9e-07
IMGA|Medtr5g027520.1 Rad51, N-terminal chr05_pseudomolecule_IMGA... 49 2e-06
>IMGA|Medtr8g133290.1 AAA ATPase; Rad51, N-terminal
chr08_pseudomolecule_IMGAG_V3 31718429-31715564 E
EGN_Mt090430 20090702
Length = 341
Score = 579 bits (1493), Expect = e-166, Method: Compositional matrix adjust.
Identities = 285/319 (89%), Positives = 297/319 (93%), Gaps = 14/319 (4%)
Query: 25 GPFPVEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASK 84
GP PVEQLQ SGIAALDIKKLKDAG+CTVESVAY+PRK+LLQIKGISDAKVDKIIEAA K
Sbjct: 23 GPLPVEQLQASGIAALDIKKLKDAGICTVESVAYTPRKDLLQIKGISDAKVDKIIEAAGK 82
Query: 85 LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTL 144
LVP+GFTSAS+LHAQR IIQIT+GSRELDKILEGGIETGSITE+YGEFRSGKTQLCHTL
Sbjct: 83 LVPMGFTSASELHAQRESIIQITTGSRELDKILEGGIETGSITELYGEFRSGKTQLCHTL 142
Query: 145 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ 204
CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNG DVLENVAYARAYNTDHQ
Sbjct: 143 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGPDVLENVAYARAYNTDHQ 202
Query: 205 SRLLLEAASMMVET--------------RTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
SRLLLEAASMMVET RTDFSGRGELSARQMHLAKFLRSLQKLADEFG
Sbjct: 203 SRLLLEAASMMVETRFALMIIDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 262
Query: 251 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 310
VAVV+TNQVV+QVDGSA+FAGPQIKPIGGNIMAHA+TTRLALRKGRGEERICKVISSPCL
Sbjct: 263 VAVVLTNQVVSQVDGSAMFAGPQIKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCL 322
Query: 311 AEAEARFQISAEGVTDVKD 329
AEAEARFQI EGV+DVKD
Sbjct: 323 AEAEARFQILGEGVSDVKD 341
>IMGA|Medtr4g025950.1 RecA bacterial DNA recombination protein
chr04_pseudomolecule_IMGAG_V3 6276787-6272604 E
EGN_Mt090430 20090702
Length = 269
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 45/255 (17%)
Query: 106 ITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 165
IT+ +LD IL GGI +TEI G GKTQ+ L V Q+PLD GG GKA+YID
Sbjct: 11 ITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGGKAIYID 70
Query: 166 AEGTFRPQRLLQIAD------------------RFG--LNGADVLENVAYARA------- 198
EG+F +R+LQIA+ FG ++ +LEN+ Y R
Sbjct: 71 TEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHPNSILENIFYFRVCSYTEQI 130
Query: 199 --------YNTDHQSRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
+ T+H+ ++ S+ R DF +++ R L + L KLA F
Sbjct: 131 ALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFD---DMALRTRLLGEMSLKLMKLAKNFS 187
Query: 251 VAVVITNQVVAQ-VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 309
+AVV+ NQV + ++GS Q+ G+ +H+ T R+ L +ER + SP
Sbjct: 188 LAVVMLNQVTTKHIEGSF-----QLTLALGDSWSHSCTNRIILY-WNDDERHAYIDKSPS 241
Query: 310 LAEAEARFQISAEGV 324
L A A + +++ G+
Sbjct: 242 LKSASAPYSVTSRGI 256
>IMGA|Medtr4g025760.1 RecA bacterial DNA recombination protein
chr04_pseudomolecule_IMGAG_V3 6204022-6199715 E
EGN_Mt090430 20090702
Length = 269
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 45/255 (17%)
Query: 106 ITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 165
IT+ +LD IL GGI +TEI G GKTQ+ L V Q+PLD GG GKA+YID
Sbjct: 11 ITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGGKAIYID 70
Query: 166 AEGTFRPQRLLQIAD------------------RFG--LNGADVLENVAYARA------- 198
EG+F +R+LQIA+ FG ++ +LEN+ Y R
Sbjct: 71 TEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHPNSILENIFYFRVCSYTEQI 130
Query: 199 --------YNTDHQSRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
+ T+H+ ++ S+ R DF +++ R L + L KLA F
Sbjct: 131 ALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFD---DMALRTRLLGEMSLKLMKLAKNFS 187
Query: 251 VAVVITNQVVAQ-VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 309
+AVV+ NQV + ++GS Q+ G+ +H+ T R+ L +ER + SP
Sbjct: 188 LAVVMLNQVTTKHIEGSF-----QLTLALGDSWSHSCTNRIILY-WNDDERHAYIDKSPS 241
Query: 310 LAEAEARFQISAEGV 324
L A A + +++ G+
Sbjct: 242 LKSASAPYSVTSRGI 256
>IMGA|Medtr8g116460.1 RecA bacterial DNA recombination protein
chr08_pseudomolecule_IMGAG_V3 26389103-26383037 H
EGN_Mt090430 20090702
Length = 269
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 106 ITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 165
IT+ +LD IL GGI +TEI G GKTQ+ L V Q+PLD GG GKA+YID
Sbjct: 11 ITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGGKAIYID 70
Query: 166 AEGTFRPQRLLQIAD------------------RFG--LNGADVLENVAYARA------- 198
EG+F +R+LQIA+ FG ++ +LEN+ Y R
Sbjct: 71 TEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQAFGVKMHPNSILENIFYFRVCSYTEQI 130
Query: 199 --------YNTDHQSRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
+ T+H+ ++ S+ R DF +++ R L + L KLA
Sbjct: 131 ALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFD---DMALRTRLLGEMSLKLMKLAKNLS 187
Query: 251 VAVVITNQVVAQ-VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 309
+AVV+ NQV + ++GS Q+ G+ +H+ T R+ L G+ER + SP
Sbjct: 188 LAVVMLNQVTTKHIEGSF-----QLTLALGDSWSHSCTNRIILY-WNGDERHAYIDKSPS 241
Query: 310 LAEAEARFQISAEGVTD 326
L A A + +++ G+ +
Sbjct: 242 LKSASAPYSVTSRGIRN 258
>IMGA|Medtr8g116050.1 RecA bacterial DNA recombination protein
chr08_pseudomolecule_IMGAG_V3 26218273-26209035 E
EGN_Mt090430 20090702
Length = 269
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 106 ITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 165
IT+ +LD IL GGI +TEI G GKTQ+ L V Q+PLD GG GKA+YID
Sbjct: 11 ITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGGKAIYID 70
Query: 166 AEGTFRPQRLLQIAD------------------RFG--LNGADVLENVAYARA------- 198
EG+F +R+LQIA+ FG ++ +LEN+ Y R
Sbjct: 71 TEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQAFGVKMHPNSILENIFYFRVCSYTEQI 130
Query: 199 --------YNTDHQSRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
+ T+H+ ++ S+ R DF +++ R L + L KLA
Sbjct: 131 ALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFD---DMALRTRLLGEMSLKLMKLAKNLS 187
Query: 251 VAVVITNQVVAQ-VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 309
+AVV+ NQV + ++GS Q+ G+ +H+ T R+ L G+ER + SP
Sbjct: 188 LAVVMLNQVTTKHIEGSF-----QLTLALGDSWSHSCTNRIILY-WNGDERHAYIDKSPS 241
Query: 310 LAEAEARFQISAEGVTD 326
L A A + +++ G+ +
Sbjct: 242 LKSASAPYSVTSRGIRN 258
>IMGA|Medtr5g098850.1 RecA bacterial DNA recombination protein;
Oligopeptide transporter OPT superfamily
chr05_pseudomolecule_IMGAG_V3 39483231-39484913 H
EGN_Mt090430 20090702
Length = 226
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 82/157 (52%), Gaps = 40/157 (25%)
Query: 171 RPQRLLQIADRFGLNGADVLENVA------------YARAYNTDHQSRLLLEAASMMVET 218
RP R++ IA+RFG++ VL+NV YARAY +HQ LLL A+ M E
Sbjct: 74 RPDRIVAIAERFGMDPWAVLDNVIFLFSVCECTRFIYARAYTYEHQHNLLLGLAAKMAE- 132
Query: 219 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIG 278
E LA+ L L K+A+EF VAV +TNQ G
Sbjct: 133 --------EPFRLLQKLAQMLSRLIKIAEEFNVAVYMTNQ-------------------G 165
Query: 279 GNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 315
G+++AHA+T RL RKG+GE+R+ K+ +P L EAEA
Sbjct: 166 GHVLAHAATIRLMFRKGKGEQRVYKLFDAPNLPEAEA 202
>IMGA|Medtr2g111540.1 RecA bacterial DNA recombination protein
chr02_pseudomolecule_IMGAG_V3 26508737-26505930 H
EGN_Mt090430 20090702
Length = 219
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 113 LDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 172
LD+ L GGI G +TE+ G GKTQ C L + LP++ GG +G+ +YID E F
Sbjct: 91 LDEALCGGIPFGVVTELVGPPGIGKTQFCLKLSLLASLPVNYGGLDGRVIYIDVESKFSS 150
Query: 173 QRLLQIADR 181
+RL++I +
Sbjct: 151 KRLIEIGTK 159
>IMGA|Medtr5g045260.1 Rad51, N-terminal
chr05_pseudomolecule_IMGAG_V3 18928086-18929529 E
EGN_Mt090430 20090702
Length = 294
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 29 VEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASKLV 86
+++L GI A D+KKL+DAG+ + +K L I G+S+AKVDKI EAA KLV
Sbjct: 29 IDKLIFQGINAGDVKKLQDAGIFICNGLMMHTKKNLTGITGLSEAKVDKICEAAEKLV 86
>IMGA|Medtr5g027520.1 Rad51, N-terminal
chr05_pseudomolecule_IMGAG_V3 11228600-11234012 H
EGN_Mt090430 20090702
Length = 592
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 29 VEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASKLVPL 88
+++L I A D+KKL DAG+ T S+ +K L +I +S+ VDKI EAA K +
Sbjct: 45 IDKLISQDIDADDVKKLLDAGIFTCNSLLLQAKKNLTRINDLSEETVDKIWEAAEKHL-- 102
Query: 89 GFTSASQLHAQRLEIIQITSGSRELDKILEGGI 121
R ++ I +GS+ D++LE I
Sbjct: 103 -----------RKSVVGIATGSQMPDELLESNI 124