Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.40 - phase: 0 /partial
         (65 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g159760.1 AT-rich interaction region; Heat shock prot...   118   6e-28
IMGA|CU179634_8.1 HSP20-like chaperone CU179634.6 36832-30192 H ...   117   2e-27
IMGA|Medtr5g024850.1 AT-rich interaction region; Heat shock prot...   112   5e-26

>IMGA|Medtr3g159760.1 AT-rich interaction region; Heat shock protein
           Hsp20 chr03_pseudomolecule_IMGAG_V3 41910304-41916235 E
           EGN_Mt090430 20090702
          Length = 379

 Score =  118 bits (296), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 60/64 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDP GRLVITG PE  DNPWGITPFKKVV+LP+RIDPLQTSAVVSLHGRL+VRVPF
Sbjct: 315 VRVQSDPVGRLVITGMPENADNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPF 374

Query: 61  ERGS 64
           E+G+
Sbjct: 375 EQGA 378


>IMGA|CU179634_8.1 HSP20-like chaperone CU179634.6 36832-30192 H
           EGN_Mt090430 20090702
          Length = 342

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 59/60 (98%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVITGQPEQLDNPWGIT FKKVVSLP+RIDPLQTSAVV+LHG+L+VRVPF
Sbjct: 282 VRVQSDPAGRLVITGQPEQLDNPWGITAFKKVVSLPARIDPLQTSAVVTLHGQLFVRVPF 341


>IMGA|Medtr5g024850.1 AT-rich interaction region; Heat shock protein
           Hsp20 chr05_pseudomolecule_IMGAG_V3 9945418-9937499 E
           EGN_Mt090430 20090702
          Length = 604

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  +NPWG+TPFKKVVSLPSRIDP QTSAVV+LHG+L+VRVPF
Sbjct: 541 VRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 600

Query: 61  ER 62
           E+
Sbjct: 601 EQ 602