Jatropha Genome Database

JcCA0317741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.20 + phase: 0 
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU179634_6.1 hypothetical protein CU179634.6 21470-21926 H ...   148   6e-37
IMGA|Medtr3g159820.1 hypothetical protein chr03_pseudomolecule_I...   135   6e-33

>IMGA|CU179634_6.1 hypothetical protein CU179634.6 21470-21926 H
          EGN_Mt090430 20090702
          Length = 97

 Score =  148 bits (374), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 84/97 (86%), Gaps = 1/97 (1%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQER-XX 59
          M+S+WR+++GNVRSF+GN  GGLRGGSNLASWVVAGTLAYFLWVKPSQ+LKR+Q+E+   
Sbjct: 1  MASDWRKSVGNVRSFVGNLTGGLRGGSNLASWVVAGTLAYFLWVKPSQELKRQQEEKAAL 60

Query: 60 XXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTKKPVE 96
              D YRYVEKRKP+PDPQETGLIYGNKNK K+  E
Sbjct: 61 AAASDAYRYVEKRKPVPDPQETGLIYGNKNKAKRAEE 97


>IMGA|Medtr3g159820.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 41936323-41931614 E
          EGN_Mt090430 20090702
          Length = 147

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 1/84 (1%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXXX 60
          M+SNWRRTLGN RSF+ NSMGGLRGGSNLASWVVAGTLAY+LW+KP QDLKREQQ +   
Sbjct: 1  MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAI 60

Query: 61 XXX-DPYRYVEKRKPIPDPQETGL 83
              DP+RYVE RKP+PDPQ   L
Sbjct: 61 ASHDDPFRYVETRKPVPDPQTNHL 84