Jatropha Genome Database

JcCA0317641.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317641.20 + phase: 0 /pseudo/partial
         (277 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g029610.1 Phosphatidate cytidylyltransferase chr02_ps...   437   e-123
IMGA|Medtr5g101250.1 Phosphatidate cytidylyltransferase chr05_ps...   395   e-110

>IMGA|Medtr2g029610.1 Phosphatidate cytidylyltransferase
           chr02_pseudomolecule_IMGAG_V3 7934897-7928681 F
           EGN_Mt090430 20090702
          Length = 426

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/248 (85%), Positives = 230/248 (92%), Gaps = 1/248 (0%)

Query: 14  RLRHRRRSNEVIPEASKENG-GHLLLHDRNKYKSMWIRAYSTIWMIGGFAFIVYMGHLYI 72
           R+RHR+RSNEVIPE SK NG G LL++D++KYKSM IRAYS++WMIG F  I+YMGHLYI
Sbjct: 17  RIRHRKRSNEVIPEVSKANGSGQLLVNDKSKYKSMLIRAYSSVWMIGSFVLIIYMGHLYI 76

Query: 73  TAMVVVIQIFMAKELFNLLRKAHEDRHLPGFRLLNWHFFFTAMLFVYGRILSQRLVNTVT 132
           TAM+VVIQIFMA+ELFNLLR+AHED+ LPGFRLLNWHFFFTAMLFVYGRILSQRLVNTV 
Sbjct: 77  TAMIVVIQIFMARELFNLLRRAHEDKQLPGFRLLNWHFFFTAMLFVYGRILSQRLVNTVN 136

Query: 133 SDKFLYQLVSSLIKYHMAICYFLYIAGFMWFILTLKKKMYKYQFGQYAWTHMILIVVFTQ 192
           SDK LY+LVSSLIKYHM +CY LYI GF+WFILTLKKKMYKYQFGQYAWTHMILIVVF Q
Sbjct: 137 SDKVLYRLVSSLIKYHMVVCYSLYITGFIWFILTLKKKMYKYQFGQYAWTHMILIVVFGQ 196

Query: 193 SSFTVANIFEGIFWFLLPATLIVINDIFAYIFGFFFGKTPLIKLSPKKTWEGFIGASVTT 252
           SSFTV +IFEGIFWFLLPATLIVINDI AYIFGFFFGKTPLIKLSPKKTWEGFIGASVTT
Sbjct: 197 SSFTVPSIFEGIFWFLLPATLIVINDIAAYIFGFFFGKTPLIKLSPKKTWEGFIGASVTT 256

Query: 253 MISAFVLC 260
           +ISAF+L 
Sbjct: 257 IISAFMLA 264


>IMGA|Medtr5g101250.1 Phosphatidate cytidylyltransferase
           chr05_pseudomolecule_IMGAG_V3 40510892-40507943 H
           EGN_Mt090430 20090702
          Length = 425

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 224/266 (84%)

Query: 1   MQRDNSTSAPSTPRLRHRRRSNEVIPEASKENGGHLLLHDRNKYKSMWIRAYSTIWMIGG 60
           +  DNS  +P TP  R RRRSNE  PE SK NG  LL++D+ KY+SMWIRAYS++WM+  
Sbjct: 4   LNSDNSCISPKTPNFRQRRRSNEFPPEISKSNGAILLVNDKYKYRSMWIRAYSSLWMLAF 63

Query: 61  FAFIVYMGHLYITAMVVVIQIFMAKELFNLLRKAHEDRHLPGFRLLNWHFFFTAMLFVYG 120
            + I+YMGHLYI AMVVVIQIFMA ELFNLLR A +D+ LP F+LLNWHFFFTAML+VYG
Sbjct: 64  VSLIIYMGHLYIWAMVVVIQIFMASELFNLLRIASQDKRLPKFKLLNWHFFFTAMLYVYG 123

Query: 121 RILSQRLVNTVTSDKFLYQLVSSLIKYHMAICYFLYIAGFMWFILTLKKKMYKYQFGQYA 180
           RILSQ LVNTVTSDKF Y+LVS+LIKY M ICYFLYIAGF+WFIL+LKK+ YKYQFGQYA
Sbjct: 124 RILSQHLVNTVTSDKFFYRLVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYA 183

Query: 181 WTHMILIVVFTQSSFTVANIFEGIFWFLLPATLIVINDIFAYIFGFFFGKTPLIKLSPKK 240
           WTHMILIVVFTQS+FTVANIF+GIFWFL PA+LI +ND+ AY FGFFFGKTPLIKLSPKK
Sbjct: 184 WTHMILIVVFTQSAFTVANIFQGIFWFLFPASLIAMNDVAAYFFGFFFGKTPLIKLSPKK 243

Query: 241 TWEGFIGASVTTMISAFVLCVLCRKF 266
           TWEGFIGASV TMI+AF       +F
Sbjct: 244 TWEGFIGASVATMIAAFTFANFLGRF 269