Jatropha Genome Database

JcCA0317621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317621.20 + phase: 0 /partial
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g114190.1 Glycosyl transferase, family 3 chr03_pseudo...   303   6e-83

>IMGA|Medtr3g114190.1 Glycosyl transferase, family 3
           chr03_pseudomolecule_IMGAG_V3 28835793-28832287 E
           EGN_Mt090430 20090702
          Length = 394

 Score =  303 bits (776), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 187/223 (83%), Gaps = 2/223 (0%)

Query: 49  SSSSRKSTTFVTALSCVREKSSTPTTAFNELIESLISRVDLTESEAETSLYYLLNDGNEA 108
           SS  R+ T+ V A   V     TP  +  +LIESLI+ VDL+E EAE+ ++ L+N+ +EA
Sbjct: 31  SSPIRRITSIVNA--TVSPNVVTPVQSVTQLIESLINGVDLSEDEAESCVHLLVNEPDEA 88

Query: 109 LISAFLVLLRAKGETFEEIVGLARAMIKHARTVEGLVDAVDIVGTGGDGANTVNISTGAS 168
           LISA LVLLRAKGET EE+ GLA+AM++HA  VEGLVD VDIVGTGGDGANTVNISTG+S
Sbjct: 89  LISAVLVLLRAKGETVEEVSGLAKAMMRHATKVEGLVDVVDIVGTGGDGANTVNISTGSS 148

Query: 169 ILAAACGTKVAKQGNRSSSSACGSADVLEALGIIIDLDPEGVSKCVNEAGIGFMMSPKYH 228
           ILAAACG KVAKQG+RSSSSACGSADVLE LG++IDL PEGV KCVNE GIGFMMSPKYH
Sbjct: 149 ILAAACGVKVAKQGSRSSSSACGSADVLEELGVVIDLGPEGVKKCVNEVGIGFMMSPKYH 208

Query: 229 PAMKIVSPVRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDL 271
           PAMKIV PVRKKLKV+TVFNILGPMLNPA+ P+AVVGVY EDL
Sbjct: 209 PAMKIVRPVRKKLKVRTVFNILGPMLNPAQAPYAVVGVYTEDL 251