Jatropha Genome Database

JcCA0317481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317481.20 - phase: 0 
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 102...    70   3e-13
IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 655...    58   1e-09

>IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
           10220899-10218990 F EGN_Mt090430 20090702
          Length = 134

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 6   MKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNI 65
           +KK +T   K    +  +V + S L  F+G  ++SR     +VW YIK  NLQ+P NK  
Sbjct: 43  VKKTVT--SKSTGGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKE 100

Query: 66  VNCDEKLKGILLGKPQVDLAELPALIKLHFPK 97
           + CD+KLK I  GK +V   E+  L+  HF K
Sbjct: 101 IFCDDKLKTIFDGKDKVVFTEIAKLLATHFVK 132


>IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
           6557466-6553115 E EGN_Mt090430 20090702
          Length = 344

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 24  VNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGIL 76
           + L   L +F+G+S++SR     R+W YIK NNLQDP +K  + CDEKLK + 
Sbjct: 269 LQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELF 321



 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 23  LVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQV 82
           + +L   L+EFVG  +++R     ++W+YI+  +LQDP N+  + CDE L+  L G   +
Sbjct: 135 ICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRA-LFGVDTI 193

Query: 83  DLAELPALIKLH 94
           ++ ++  ++  H
Sbjct: 194 NMFQMNKVLAKH 205