Jatropha Genome Database

JcCA0317291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317291.30 + phase: 0 /partial
         (379 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g049600.1 Initiation factor 2B alpha/beta/delta chr02...   516   e-147
IMGA|Medtr5g033160.1 Initiation factor 2B related chr05_pseudomo...    57   2e-08
IMGA|Medtr8g026500.1 Initiation factor 2B related chr08_pseudomo...    53   2e-07

>IMGA|Medtr2g049600.1 Initiation factor 2B alpha/beta/delta
           chr02_pseudomolecule_IMGAG_V3 13600275-13596414 F
           EGN_Mt090430 20090702
          Length = 372

 Score =  516 bits (1328), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/343 (73%), Positives = 283/343 (82%), Gaps = 1/343 (0%)

Query: 14  SNTLQSICYKRGSLHLLDQRKLPLETEYLVIGDASDGWSAIREMVVRGXXXXXXXXXXXX 73
           +N LQ+I Y RGSL LLDQ KLPLE+ YL I D++DGW+AIR+MVVRG            
Sbjct: 9   TNMLQAIRYNRGSLQLLDQTKLPLESVYLEIRDSNDGWNAIRDMVVRGAPAIAIAAALSL 68

Query: 74  XVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAATKLKEVIXXXXXXXXXXX 133
            VEV NL DFNG++DDA  FL +KLDYLVSSRPTAVNLSDAATKLKE+I           
Sbjct: 69  AVEVSNLDDFNGSTDDAVYFLQKKLDYLVSSRPTAVNLSDAATKLKEIISKAAATTSEAK 128

Query: 134 XVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLSVLTHCNTGSLATAGYGT 193
            VFQAY+EAAEIMLEDDVASN+AIG++GASFI+NQ + + +LSVLTHCNTGSLATAGYGT
Sbjct: 129 GVFQAYLEAAEIMLEDDVASNRAIGTYGASFIQNQTEKL-KLSVLTHCNTGSLATAGYGT 187

Query: 194 ALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRV 253
           ALGVIR+L++ GVLERAYCTETRPFNQG+RLTA+ELVHDKIP           LM+ GRV
Sbjct: 188 ALGVIRALYSGGVLERAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMQAGRV 247

Query: 254 SAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDLCLSSGNQIVIEER 313
            AV+VGADRVA+NGDTANKIGTYS+ALCA  HN+PF+VAAPLTSIDL LSSG QIVIEER
Sbjct: 248 DAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFFVAAPLTSIDLSLSSGQQIVIEER 307

Query: 314 SPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
           SPKELLN RGGLGEQVAASGIS+WNPAFDVTPANLISGIITEK
Sbjct: 308 SPKELLNMRGGLGEQVAASGISVWNPAFDVTPANLISGIITEK 350


>IMGA|Medtr5g033160.1 Initiation factor 2B related
           chr05_pseudomolecule_IMGAG_V3 13513288-13504587 E
           EGN_Mt090430 20090702
          Length = 414

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 58/113 (51%), Gaps = 15/113 (13%)

Query: 252 RVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDLC-LSSGNQIVI 310
           RV+ VIVGA  V ANG     +G   +AL A  H +PF V A   S  LC L   N  V+
Sbjct: 276 RVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLA--GSHKLCPLYPHNPEVL 333

Query: 311 --EERSPKELLNTRGGLGE----QVAASG--ISIWNPAFDVTPANLISGIITE 355
             E RSP ELL+     GE      +ASG  + + NP FD  P  L+S  IT+
Sbjct: 334 LNELRSPSELLD----FGEFSDCMDSASGGSLHVVNPTFDYVPPKLVSLFITD 382


>IMGA|Medtr8g026500.1 Initiation factor 2B related
           chr08_pseudomolecule_IMGAG_V3 5700469-5698010 E
           EGN_Mt090430 20090702
          Length = 251

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 209 RAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGD 268
           R +CTE RP   G RL+  +L    +P            M +  V  V+VGAD V  +G 
Sbjct: 98  RVFCTEGRPDRTGLRLSN-DLAKLDVPVKLVIDSAVAYTMDE--VDMVLVGADGVVESGG 154

Query: 269 TANKIGTYSLALCAMHHNIPFYVAA 293
             N +GTY +AL A   N P YVAA
Sbjct: 155 IINMMGTYQIALVAKSMNKPVYVAA 179