Jatropha Genome Database
- JcCA0317221.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317221.30 + phase: 1 /TE/partial
(745 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 273 2e-73
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 259 2e-69
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 257 1e-68
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 197 1e-50
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 191 1e-48
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 164 1e-40
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 164 2e-40
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 134 1e-31
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 132 8e-31
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 107 2e-23
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 104 1e-22
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 102 7e-22
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 92 6e-19
IMGA|Medtr6g070690.1 hypothetical protein chr06_pseudomolecule_I... 84 3e-16
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 81 2e-15
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 77 4e-14
IMGA|Medtr6g070700.1 hypothetical protein chr06_pseudomolecule_I... 70 5e-12
IMGA|Medtr6g065010.1 reverse transcriptase, putative chr06_pseud... 65 9e-11
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 60 6e-09
IMGA|Medtr3g109400.1 hypothetical protein chr03_pseudomolecule_I... 52 9e-07
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 50 3e-06
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 190/599 (31%), Positives = 298/599 (49%), Gaps = 86/599 (14%)
Query: 75 CFKCLGKGHYASQCPNKRVMIAK-DDGNISSESECSXXXXXXXXXXXXXXXXXXXXPEHG 133
CF C K ++ +CPN++ ++ + +D + ++ E S E
Sbjct: 309 CFTCDEKFSFSHRCPNRQYLLLQLEDDDTATSEEGSLDSPGAVA-------------EEE 355
Query: 134 EALVARRALNMHVKEESLEQRENIFHTRC--LISGKVCTLIIDGGSCTNVASVNMVNKLN 191
A+V + H+ +L + R I GK +++D GS N + L
Sbjct: 356 PAVVP----DHHLSFNALHGSSGVGTLRFQGTIQGKPVQILLDSGSSENFLQPRIAKFLQ 411
Query: 192 LTCLKHPKPYKL-----QWLNDCGEVKVTKQVLVPFSIGWYEDEILCDIVPM--QDLLLG 244
L ++ +K+ Q L G V + I + + ++P+ DL+LG
Sbjct: 412 LP-IEPASQFKVLVGNGQSLEVAGLVSNLQ-----VDIQNHAISLPVYLLPLTGADLVLG 465
Query: 245 RPWQYDRRAHHDGFHNRYSLIHKGKKVVLVPLSPQEVYEDQRKILEREREVSALRKQERE 304
PW H + Y H G + +Y +Q ++K +
Sbjct: 466 APWLASLGPHIADYKALYIKFHLGNTFI-------TLYGEQ------------IQKPSQA 506
Query: 305 DSKNEGKEASKITKQINGPNVXXXXXXXXXXQTFYARAREVKCAIALEKLVLLLRYKEIL 364
+ + AS TK I +TFY LL +
Sbjct: 507 HFHHIKRLAS--TKAI--------------AETFYLH---------------LLDAQPPN 535
Query: 365 LAETNINLDNLPSMFVSMLQEFDNVFPTELPSGLPPLRGIEHQIDFIPGSTIPNRPAYRS 424
L T I +NL +L ++ +VF + P+GLPP R +H I + S YR
Sbjct: 536 LMSTVIP-ENLDPALHDLLSKYSSVF--QSPAGLPPCRQQDHAIPLLTDSNPVKVKPYRY 592
Query: 425 NPMEIKELQRQVDELMEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRH 484
+ ++++ V E++++G+++ S SP + PVLLV KKDG+WR C D RA+N ITVK
Sbjct: 593 AHSQKTQIEKMVLEMLQQGIIQPSSSPFSSPVLLVKKKDGSWRFCTDYRALNAITVKDSF 652
Query: 485 PIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPFGLSN 544
PIP +D++LDEL GA YF+K+DL+SGYHQI ++ D KTAF+T GLYEWLVMPFGLSN
Sbjct: 653 PIPTVDELLDELFGAAYFSKLDLLSGYHQILVKSEDRHKTAFRTHQGLYEWLVMPFGLSN 712
Query: 545 APSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLNK 604
AP++F +MN V + V+V+FD IL+YS + + H+ H+ VLQ L++ L+AK++K
Sbjct: 713 APASFQNLMNKVFCNLLRRSVLVFFDDILVYSPTWHAHLAHLEEVLQLLQTHSLFAKISK 772
Query: 605 CTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDF 663
C F + ++ +LG VS QG+ +D KVKA+ +WPTP ++ ++R F GL +YRRF++ +
Sbjct: 773 CCFGMTQIDYLGHTVSGQGVAMDCSKVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGY 831
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 170/245 (69%), Gaps = 1/245 (0%)
Query: 419 RPAYRSNPMEIKELQRQVDELMEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKI 478
RP Y+ + +E+++QV EL+ G++R SMS + PV+LV KKD +WRMCVD RA+NK
Sbjct: 156 RP-YKYPHHQKEEIEKQVAELLAAGVIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKA 214
Query: 479 TVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVM 538
+ ++PIP +D++LDEL+GAT F+KIDL SGYHQIR+ D KTAF+T G YE+LVM
Sbjct: 215 RIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAFRTHNGHYEYLVM 274
Query: 539 PFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKL 598
PFGL NAP+TF MN + F KFV+V+FD ILIYSK L +H H+ VL L S
Sbjct: 275 PFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHLNQVLTILFSNCF 334
Query: 599 YAKLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRR 658
A L+KC F + +LG V+S +G+ VD EK++ I EWP PK++ VR F GL +YR+
Sbjct: 335 VANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCILEWPEPKNVKGVRGFLGLTGYYRK 394
Query: 659 FVKDF 663
FVKD+
Sbjct: 395 FVKDY 399
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 178/283 (62%), Gaps = 15/283 (5%)
Query: 383 LQEFDNVFPTEL--PSGLPPLRGIEHQIDFIPGSTIPNRPAYRSNPMEIKELQRQVDELM 440
+Q N +PT P GLPP R +H I +P + N YR + + + + +++
Sbjct: 537 IQHLLNSYPTIFIEPHGLPPKRPHDHHIPLLPNTPPVNVKPYRYPHSQKEAMTTIIHDML 596
Query: 441 EKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGAT 500
G++ S SP + PVLLV KKDG+WR CVD RA+N +T+ R PIP +D++ DEL A+
Sbjct: 597 HDGIIVPSTSPYSSPVLLVRKKDGSWRFCVDYRALNAVTICDRFPIPTIDELFDELGSAS 656
Query: 501 YFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAF 560
F+K DL SGYHQIR+ P D KT F+T G YE+LVMPFGLSNAPSTF MN L +
Sbjct: 657 LFSKTDLRSGYHQIRVVPEDTHKTTFRTFDGHYEFLVMPFGLSNAPSTFQSAMNDFLRPY 716
Query: 561 FGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFCIDRLVFLGFVVS 620
+ +SL+DH+ H+R++L L S AK++KC F +D + +LG ++S
Sbjct: 717 LRR-------------RSLDDHLIHLRLILDLLASHHFVAKMSKCVFAVDTIDYLGHIIS 763
Query: 621 AQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDF 663
+G++ DE+K++AI WPTP+S++ +R F GL SFYRRFV+ +
Sbjct: 764 HKGVQPDEDKIQAILSWPTPRSLTTLRGFLGLISFYRRFVRHY 806
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 141/225 (62%), Gaps = 16/225 (7%)
Query: 439 LMEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHG 498
++ GL++ S P + VLLV KK G+WR CVD RA+N I K R P+P +D++LD+L
Sbjct: 1 MLSSGLIQPSRGPFSSHVLLVKKKVGSWRCCVDYRALNAI--KDRFPLPTIDELLDDLGK 58
Query: 499 ATYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHVLG 558
A++F+K+DL G+HQIR+ P D KTAF+T +G YE VMPFGL NAPSTF MN++
Sbjct: 59 ASWFSKLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQ 118
Query: 559 AFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFCIDRLVFLGFV 618
F KF DH+ H++++L L + + K +KC F +L +LG +
Sbjct: 119 PFLRKFAA--------------DHLTHLQLILTKLLEAQFFLKQSKCLFGQRQLEYLGHI 164
Query: 619 VSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDF 663
+S +GI+ D K++A+ EWP P S + +R F GL FYR+F+K +
Sbjct: 165 ISQKGIQADPSKLQAMVEWPQPTSTTLLRRFLGLTGFYRKFIKGY 209
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 124/177 (70%), Gaps = 15/177 (8%)
Query: 380 VSMLQEFDNVFPTELPSGLPPLRGIEHQIDFIPGSTIPNRPAYRSNPMEIKELQRQVDEL 439
+ +L++F+ + EL + LP +R I+H+ID IP S++PN P YR + E + ++ Q+++L
Sbjct: 8 IPILKDFNELIIEELSNDLPSMRDIQHKIDLIPCSSLPNLPHYRMSSKENEIVREQIEDL 67
Query: 440 MEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGA 499
+ KG +RESMS C VPVLLVPKK WR CV+ R +NKIT+KY+ PIPRL+DMLDE
Sbjct: 68 LRKGFIRESMSSCDVPVLLVPKKGNQWRKCVESRVINKITIKYQFPIPRLEDMLDE---- 123
Query: 500 TYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHV 556
+ +RI+PGDE +T FK+K GLYE LVMPF LSNAPSTFMR+MN V
Sbjct: 124 -----------FQNLRIRPGDERQTYFKSKDGLYESLVMPFRLSNAPSTFMRLMNQV 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 625 EVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDFLFNCSTTNRNNQKG 677
+VDEEKV+AI++WP P S++E RSFHGLA+FYRRF++ F + + +KG
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEKG 220
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 125/205 (60%)
Query: 456 VLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIR 515
++ VPKKDG RMCVD R +NK + K P+P +D ++D + F+ +D SGY+QI+
Sbjct: 12 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 71
Query: 516 IQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIY 575
+ P D KT+F T +G + + VMPFGL NA +T+ R M + K V VY D +++
Sbjct: 72 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 131
Query: 576 SKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIK 635
S H+E++ + + LR KL NKCTF + LGFVVS +GIEVD +KV+AI+
Sbjct: 132 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEVDPDKVRAIR 191
Query: 636 EWPTPKSISEVRSFHGLASFYRRFV 660
E P P++ +VR F G ++ RF+
Sbjct: 192 EMPAPQTEKQVRGFLGRLNYISRFI 216
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 3/227 (1%)
Query: 456 VLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIR 515
++ VPKKDG RM VD R +NK + K P+P +D ++D + F+ +D SGY+QI+
Sbjct: 144 IVPVPKKDGKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 203
Query: 516 IQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIY 575
+ P D KT+F T +G + + VMPFGL NA +T+ R M + K V VY D +++
Sbjct: 204 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 263
Query: 576 SKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIK 635
S H+E++ + + LR KL NKCTF + LGF+VS +GIEVD +KV+AI+
Sbjct: 264 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 323
Query: 636 EWPTPKSISEVRSFHGLASFYRRFVKDFLFNCSTTN---RNNQKGSW 679
E P P++ +VR F G ++ RF+ C R NQ W
Sbjct: 324 EMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVW 370
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 430 KELQRQVDELMEKGLVRESMSPCAVP-VLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPR 488
K + +V +L++ + E P + +LV K++G WRMCVD +N + KY +P+P
Sbjct: 7 KVVDEEVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVDYTDLNMVCPKYPYPLPN 66
Query: 489 LDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPST 548
+D ++D G + +D SGY+QIR+ P D KTAF T Y + VM FGL NA +T
Sbjct: 67 IDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEVMYFGLKNAGAT 126
Query: 549 FMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFC 608
F R M+ G+ VY D ++ +K H + + +L +R ++ KC+F
Sbjct: 127 FQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEILGQVRKYRIRLNPTKCSFG 186
Query: 609 IDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHG-LASFYR 657
+ FLGF+++ GIE + +K +AI +P ++ EV+ G LA+ R
Sbjct: 187 VQVGKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLAALSR 236
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233082.3 16661-16311 H EGN_Mt090430
20090702
Length = 116
Score = 132 bits (331), Expect = 8e-31, Method: Composition-based stats.
Identities = 57/115 (49%), Positives = 83/115 (72%)
Query: 538 MPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEK 597
MPFGLSNAPS+F MN +L + +FV+V+FD ILIYS ++ DH+ H+R++L L + +
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 598 LYAKLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGL 652
AKL+KC F ++ + +LG V+SAQG++ D EKV AI +WP P S++ +R F GL
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVISAQGVKADPEKVTAITDWPKPHSLTALRGFLGL 115
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 553 MNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLNKCTFCIDRL 612
MN VL + KF +V+FD IL+YSK + H H+ VL L+ +L A KCTF +L
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQL 60
Query: 613 VFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDF 663
+LG ++SAQG+ D++KV + WP PK + +R F GL +YRRFV+++
Sbjct: 61 EYLGHIISAQGVAADQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNY 111
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 380 VSMLQEFDNVFPTELPSGLPPLRGIEHQIDFIPGSTIPNRPAYRSNPMEIKELQRQVDEL 439
++L EF +VF P GLPP R +H I +P + N YR + + + ++
Sbjct: 697 ANLLSEFPSVF--LKPHGLPPSRPHDHHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDM 754
Query: 440 MEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGA 499
++ G + S SP + PVLLV KKDGTWR CVD RA+N +TVK R PIP +D++LDEL A
Sbjct: 755 LQNGTIMPSTSPFSSPVLLVRKKDGTWRFCVDYRALNAVTVKDRFPIPTIDELLDELGAA 814
Query: 500 TYFTK 504
T F +
Sbjct: 815 TIFLR 819
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 82/139 (58%)
Query: 456 VLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIR 515
++ VPKKDG RMCVD R +NK + K P+P +D ++D + F+ +D SGY+QI+
Sbjct: 12 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 71
Query: 516 IQPGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIY 575
+ P D KT+F T +G + + VM FGL NA +T+ R M + K V VY D +++
Sbjct: 72 MSPEDREKTSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 131
Query: 576 SKSLNDHIEHVRIVLQALR 594
S H+E++ + + LR
Sbjct: 132 STDEEQHVEYLTKMFERLR 150
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 90/173 (52%)
Query: 468 MCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFK 527
M V+ ++++ K +P+ +D ++D G F+ +D S Y+QI + P DE KT F
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 528 TKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVR 587
+ G + ++VM F L N T+ R+MN V + V D +++ + DH+ H+
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLN 120
Query: 588 IVLQALRSEKLYAKLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTP 640
+V +R +++ L CTF + F+G ++ +GI+V+ + KA + P
Sbjct: 121 VVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNPDNFKAEVDMELP 173
>IMGA|Medtr6g070690.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 13408201-13409720 E
EGN_Mt090430 20090702
Length = 90
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 181 VASVNMVNKLNLTCLKHPKPYKLQWL-----NDCGEVKVTKQVLVPFSIGWYEDEILCDI 235
+AS +MV K L L+HP PY L L D +V VTKQV V +IG YEDE+LCD+
Sbjct: 1 MASTSMVEKWRLPVLEHPDPYILYSLEDPEFKDMADVLVTKQVRVSVTIGEYEDEVLCDV 60
Query: 236 VP--MQDLLLGRPWQYDRRAHHD 256
VP +DLLLG PWQ RRA HD
Sbjct: 61 VPSKTRDLLLGLPWQQQRRAKHD 83
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 406 HQIDFIPGSTIPNRPAYRSNPMEIKELQRQVDELMEKGLVRESMSPCAVP-VLLVPKKDG 464
HQ+ PG ++ + + +P + ++ V + +E+ + E+ + V+LV K +G
Sbjct: 171 HQLTVDPGISVVAQRRRKQSPEKSVAAEKTVKDFLEEKFILEAKYTTWLSNVVLVKKSNG 230
Query: 465 TWRMCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKT 524
WRM VD +N++ K +P+P +D ++D G + +D GY+QI + GD+ KT
Sbjct: 231 KWRMSVDYTDLNRVCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPMVEGDKMKT 290
Query: 525 AFKTKYGLYEWLVMPFGL 542
F T+ G Y + VMPFGL
Sbjct: 291 TFMTESGNYYYNVMPFGL 308
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 61/109 (55%)
Query: 468 MCVDCRAVNKITVKYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFK 527
MC D +NK+ K +P+P +D ++ + +D SGY++IR+ DE KTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 528 TKYGLYEWLVMPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYS 576
T Y + MPFGL N +TF R+++ V + GK + VY D +++ S
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVVKS 109
>IMGA|Medtr6g070700.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 13409722-13411687 E
EGN_Mt090430 20090702
Length = 73
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 181 VASVNMVNKLNLTCLKHPKPYKLQWL-----NDCGEVKVTKQVLVPFSIGWYEDEILCDI 235
+AS +MV K L L+HP PY L L D +V VTKQV V F+IG YEDE+LCD+
Sbjct: 1 MASTSMVEKWRLPVLEHPDPYILFSLEDPEFKDMADVLVTKQVRVSFTIGEYEDEVLCDV 60
Query: 236 VP--MQDLLLGRP 246
VP +DLLLG P
Sbjct: 61 VPYKTRDLLLGLP 73
>IMGA|Medtr6g065010.1 reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12073349-12073158 H
EGN_Mt090430 20090702
Length = 63
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 538 MPFGLSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEK 597
MPFGL NAPS F IMN + FV+V+FD ILIY + +DH+ H+ IV + L +
Sbjct: 1 MPFGLCNAPSIFQAIMNQIFSPHLRCFVIVFFDAILIYIHTFHDHLIHLDIVFRYLMDNQ 60
Query: 598 LYA 600
++
Sbjct: 61 FFS 63
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 481 KYRHPIPRLDDMLDELHGATYFTKIDLMSGYHQIRIQPGDEWKTAFKTKYGLYEWLVMPF 540
K +P+P +D ++D G F+ +D S Y+QI + GD+ KTAF T+ G Y + VMPF
Sbjct: 5 KDAYPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNVMPF 64
Query: 541 GLSNAPST 548
GL N +T
Sbjct: 65 GLRNMGAT 72
>IMGA|Medtr3g109400.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 27405251-27409510 H
EGN_Mt090430 20090702
Length = 65
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 438 ELMEKGLVRESMSPCAVPVLLVPKKDGTWRMCVDCRAVNKITVKYRHPIPRLDDMLDE-- 495
EL+ +G++ S++P + PV+LV KD ++MC+ +A+NKIT+ + IP +DD+
Sbjct: 2 ELLCRGIILCSINPYSSPVILVKMKDVIYKMCLYYQALNKITISRKFSIPIVDDLFKSYN 61
Query: 496 LHG 498
LHG
Sbjct: 62 LHG 64
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 542 LSNAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYS-KSLNDHIEHVRIVLQALRSEKLYA 600
+ +P F R M+ +L F F ++Y D IL++S K L+DH + V +VL +
Sbjct: 1 MKQSPGIFQRRMDTILKEF-KDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVL 59
Query: 601 KLNKCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTP-KSISEVRSFHGLASF--YR 657
K +++ +LG + + + ++ ++++PT K E++ F GL ++ Y
Sbjct: 60 SKKKAVVAQNKINYLGLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGLLTYISYE 119
Query: 658 RFVKDF 663
F+K+
Sbjct: 120 GFIKNL 125