Jatropha Genome Database

JcCA0317221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.20 - phase: 0 /partial
         (522 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g092740.1 Lysine decarboxylase; chr04_pseudomolecule_...   716   0.0  
IMGA|Medtr4g092760.1 Lysine decarboxylase; chr04_pseudomolecule_...   706   0.0  
IMGA|Medtr4g092750.1 Lysine decarboxylase; chr04_pseudomolecule_...   702   0.0  
IMGA|Medtr5g103850.1 Orn/Lys/Arg decarboxylase, major region chr...    95   1e-19
IMGA|Medtr5g103840.1 hypothetical protein chr05_pseudomolecule_I...    59   5e-09

>IMGA|Medtr4g092740.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19458427-19462305 E
           EGN_Mt090430 20090702
          Length = 577

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/526 (66%), Positives = 424/526 (80%), Gaps = 5/526 (0%)

Query: 1   ERSILEPKKKQQRSCRI----SVSTDVSLISNSHISQPDTFPPLVXXXXXXXXXXXXXFH 56
           ERSI  P+  +  S       S++ + +  SNS   +    PPLV             FH
Sbjct: 46  ERSIALPEYGKYESVGTVSTESITNNPNECSNSPEIRQSGLPPLVSALKASAEENAATFH 105

Query: 57  FPGHNRGRAAPVSLTQLIGLRPFIHDLPELPELDNLFSPEGPILKAQMLAAKLFGSLETW 116
           FPGHNRG AAP S+T+LIG RP++HDLPELPELDNLF P+GPIL+AQ  A+KLFGS ETW
Sbjct: 106 FPGHNRGHAAPASMTRLIGRRPYVHDLPELPELDNLFCPQGPILEAQTEASKLFGSSETW 165

Query: 117 FLVGGTTCGIQASIMATCSPGEHIILPRNCHISAISAMVLSGAIPKYIIPEYDCRWDIAG 176
           FLVGGTTCGIQA+IMATCSPGE +ILPRNCH+SAISAMVLSGA+PKYI+P+Y   WDIAG
Sbjct: 166 FLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIVPDYKNDWDIAG 225

Query: 177 GMTPSQVEKAIKELEMEGHKPAAVFVTSPTYHGISSNLNEISELCHSREIPVIVDEAHGA 236
           G+TP QV  AI+ELE+EG K AAVF+TSPTYHGI SNL++ISELCHSR+IP+IVDEAHGA
Sbjct: 226 GVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHSRKIPLIVDEAHGA 285

Query: 237 HLGFHPQMPLSALKQGADLVVQSTHKVLSSLTQSSMLHMSGNIVDKERICQCLQTLQSTS 296
           HLGFH ++P SAL+QGADL VQSTHKVL SLTQSSMLHMSG+IVDKE+I +CLQTLQSTS
Sbjct: 286 HLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQSTS 345

Query: 297 PSYLLLASLDAARAQLSEKPETIFNGAMKLATEAKNLIKKIPGITLLEIPSFSKFPAMDP 356
           PSYLLLASLDAARAQLSE P+T+FN A++LA EAK+ +K+ PGI +LE  SF    A+DP
Sbjct: 346 PSYLLLASLDAARAQLSESPDTVFNQAIELANEAKSSLKRFPGILVLENSSFLTIRAIDP 405

Query: 357 LRLTIGFWQLGLSGYEADDILDRNHRVVSELVESQSITFAINLGTCEEHVQRLVSGLKEL 416
           LRLT+GFW+LGLSGYEAD+IL R+  +V ELV ++SIT+A+NLGTC +HVQRL+SG+K L
Sbjct: 406 LRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGIKHL 465

Query: 417 SASSLKTGTIEEKVKNGQNVLFTDISMTLNPRDAFFAKKRRVSIRESLGKVCGELICPYP 476
           +A+       +++V   ++  F DI  +L PRDAFFA KR+V+I+ES+GKV GELICPYP
Sbjct: 466 AATYPSIQQPKDEVLT-EHTPFDDIITSLTPRDAFFASKRKVTIKESIGKVSGELICPYP 524

Query: 477 PGIPAMIPGEVITERVLDYLLDVRSKGVVINGASDPQLSSIVICNV 522
           PGIP +IPGEVITER ++YLL VRSKG  I+GASDP LSSIV+CNV
Sbjct: 525 PGIPVLIPGEVITERAVNYLLHVRSKGADISGASDPLLSSIVVCNV 570


>IMGA|Medtr4g092760.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19473940-19476251 E
           EGN_Mt090430 20090702
          Length = 532

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/526 (65%), Positives = 415/526 (78%), Gaps = 5/526 (0%)

Query: 1   ERSILEPKKKQQRSC----RISVSTDVSLISNSHISQPDTFPPLVXXXXXXXXXXXXXFH 56
           ERS    + +Q++S       S++ +  L SNS + Q    PPLV             FH
Sbjct: 8   ERSTALQEYEQEKSIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENAASFH 67

Query: 57  FPGHNRGRAAPVSLTQLIGLRPFIHDLPELPELDNLFSPEGPILKAQMLAAKLFGSLETW 116
           FPGHNRG AAP SLTQLIG+RP+ HDL  +PELDNLF P+GPIL+AQ  A+KLFGS ETW
Sbjct: 68  FPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETW 127

Query: 117 FLVGGTTCGIQASIMATCSPGEHIILPRNCHISAISAMVLSGAIPKYIIPEYDCRWDIAG 176
           FLV GTTCG+QA+IMATCSPGE++ILPRN H+SAISAMVLSGA PKYIIP+Y   WDIAG
Sbjct: 128 FLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDWDIAG 187

Query: 177 GMTPSQVEKAIKELEMEGHKPAAVFVTSPTYHGISSNLNEISELCHSREIPVIVDEAHGA 236
           G+TP QV  AI+ELE+EG K AAVF+TSPTYHG+ SNL++IS LCHSR+IP+IVDEAHGA
Sbjct: 188 GVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGA 247

Query: 237 HLGFHPQMPLSALKQGADLVVQSTHKVLSSLTQSSMLHMSGNIVDKERICQCLQTLQSTS 296
           HLG H ++P SAL+QGADL VQSTHKVLSSLTQSSMLHMSG+IVDKE+I +CLQTLQSTS
Sbjct: 248 HLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTLQSTS 307

Query: 297 PSYLLLASLDAARAQLSEKPETIFNGAMKLATEAKNLIKKIPGITLLEIPSFSKFPAMDP 356
           PSYLLLASLDAARAQLSE P  +F  A++LA EAK L+K+IPG+++LE  SF  FPA DP
Sbjct: 308 PSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENSSFPNFPAFDP 367

Query: 357 LRLTIGFWQLGLSGYEADDILDRNHRVVSELVESQSITFAINLGTCEEHVQRLVSGLKEL 416
            RLT+GFW+LGLSGY+A++IL R+  +V ELV  +SIT+ +NLGTC +HVQRL+SG K L
Sbjct: 368 FRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLSGAKYL 427

Query: 417 SASSLKTGTIEEKVKNGQNVLFTDISMTLNPRDAFFAKKRRVSIRESLGKVCGELICPYP 476
           +A        ++KV    +  F DI M+L PRDAFFA KR+V ++ES+GKV GEL+CPYP
Sbjct: 428 AAVYSSIQQRKDKVLT-DHAPFDDIIMSLTPRDAFFASKRKVMVKESIGKVSGELVCPYP 486

Query: 477 PGIPAMIPGEVITERVLDYLLDVRSKGVVINGASDPQLSSIVICNV 522
           PGIP +IPGEVITE+ +DYLL VRS+G  I+GASDP LSSIV+CNV
Sbjct: 487 PGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLLSSIVVCNV 532


>IMGA|Medtr4g092750.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19463138-19466751 E
           EGN_Mt090430 20090702
          Length = 599

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/526 (65%), Positives = 413/526 (78%), Gaps = 5/526 (0%)

Query: 1   ERSILEPKKKQQRSC----RISVSTDVSLISNSHISQPDTFPPLVXXXXXXXXXXXXXFH 56
           ERS    + +Q+ S       S++ +  L SNS + Q    PPLV             FH
Sbjct: 75  ERSTALQEYEQEESIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENAASFH 134

Query: 57  FPGHNRGRAAPVSLTQLIGLRPFIHDLPELPELDNLFSPEGPILKAQMLAAKLFGSLETW 116
           FPGHNRG AAP SLTQLIG+RP+ HDL  +PELDNLF P+GPIL+AQ  A+KLFGS ETW
Sbjct: 135 FPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETW 194

Query: 117 FLVGGTTCGIQASIMATCSPGEHIILPRNCHISAISAMVLSGAIPKYIIPEYDCRWDIAG 176
           FLV GTTCG+QA+IMATCSPGE++ILPRN H+SAISAMVLSGA PKYIIP+Y   WDIAG
Sbjct: 195 FLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDWDIAG 254

Query: 177 GMTPSQVEKAIKELEMEGHKPAAVFVTSPTYHGISSNLNEISELCHSREIPVIVDEAHGA 236
           G+TP QV  AI+ELE+EG K AAVF+TSPTYHG+ SNL++IS LCHSR+IP+IVDEAHGA
Sbjct: 255 GVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGA 314

Query: 237 HLGFHPQMPLSALKQGADLVVQSTHKVLSSLTQSSMLHMSGNIVDKERICQCLQTLQSTS 296
           HLG H ++P SAL+QGADL VQSTHKVLSSLTQSSMLHMSG+IVDKE+I +CLQTLQSTS
Sbjct: 315 HLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTLQSTS 374

Query: 297 PSYLLLASLDAARAQLSEKPETIFNGAMKLATEAKNLIKKIPGITLLEIPSFSKFPAMDP 356
           PSYLLLASLDAARAQLSE P  +F  A++LA EAK L+K+IPG+++LE  SF  FPA DP
Sbjct: 375 PSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENSSFPNFPAFDP 434

Query: 357 LRLTIGFWQLGLSGYEADDILDRNHRVVSELVESQSITFAINLGTCEEHVQRLVSGLKEL 416
            RLT+GFW+LGLSGY+A++IL R+  +V ELV  +SIT+ +NLGTC +HVQRL+ G K L
Sbjct: 435 FRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLLGAKHL 494

Query: 417 SASSLKTGTIEEKVKNGQNVLFTDISMTLNPRDAFFAKKRRVSIRESLGKVCGELICPYP 476
           +A        ++KV    +  F DI M+L PRDAFFA KR+V ++ES+GKV GELICPYP
Sbjct: 495 AAVYSSIQQRKDKVLT-DHAPFDDIIMSLTPRDAFFASKRKVMVKESIGKVSGELICPYP 553

Query: 477 PGIPAMIPGEVITERVLDYLLDVRSKGVVINGASDPQLSSIVICNV 522
           PGIP +IPGEVITE+ +DYLL VRS+G  I+GASDP LSSIV+CNV
Sbjct: 554 PGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLLSSIVVCNV 599


>IMGA|Medtr5g103850.1 Orn/Lys/Arg decarboxylase, major region
           chr05_pseudomolecule_IMGAG_V3 41617647-41617871 H
           EGN_Mt090430 20090702
          Length = 74

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 59/73 (80%)

Query: 272 MLHMSGNIVDKERICQCLQTLQSTSPSYLLLASLDAARAQLSEKPETIFNGAMKLATEAK 331
           M+H+  NIVDKE+I +  QTL++T PSYLL+ASLD ARAQLSE P+ +FN A++L  EAK
Sbjct: 1   MMHLLDNIVDKEKIFRYFQTLETTGPSYLLMASLDTARAQLSESPKNVFNQAIELENEAK 60

Query: 332 NLIKKIPGITLLE 344
            L+K+I GI++LE
Sbjct: 61  CLLKRISGISVLE 73


>IMGA|Medtr5g103840.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 41617043-41617512 H
          EGN_Mt090430 20090702
          Length = 91

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 55 FHFPGHNRGRAAPVSLTQLIGLRPFIHDLPELPELDNLF 93
          FHF GHNRG AAP SLTQLIG+R + HDL  + EL NLF
Sbjct: 46 FHFRGHNRGHAAPSSLTQLIGIRLYAHDLYNILELVNLF 84