Jatropha Genome Database

JcCA0317221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.10 - phase: 0 /partial
         (505 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g092760.1 Lysine decarboxylase; chr04_pseudomolecule_...   548   e-156
IMGA|Medtr4g092740.1 Lysine decarboxylase; chr04_pseudomolecule_...   546   e-156
IMGA|Medtr4g092750.1 Lysine decarboxylase; chr04_pseudomolecule_...   544   e-155
IMGA|Medtr5g103840.1 hypothetical protein chr05_pseudomolecule_I...    53   3e-07

>IMGA|Medtr4g092760.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19473940-19476251 E
           EGN_Mt090430 20090702
          Length = 532

 Score =  548 bits (1412), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/473 (58%), Positives = 349/473 (73%), Gaps = 6/473 (1%)

Query: 36  SVSPERSTSKPEKKQQRSSQGKSISSRKDDS-LISNFHVSQPDTSPPLVTXXXXXXXXXX 94
           +V  ERST+  E +Q++S    + +S  +++ L SN  V Q    PPLV+          
Sbjct: 4   AVCLERSTALQEYEQEKSIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENA 63

Query: 95  XTFHFPGHNRGQAAPVSLTQLIGLKPFIHDLTGLQVLDKLFSPEGPIVEAQKQAAKLFGS 154
            +FHFPGHNRG AAP SLTQLIG++P+ HDL+ +  LD LF P+GPI+EAQ++A+KLFGS
Sbjct: 64  ASFHFPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGS 123

Query: 155 LETWFLVGGTTSGIQAAIMATCSPGEHIILPRNCHVSAISAMVLSGAIPKYIIPEYDSEW 214
            ETWFLV GTT G+QAAIMATCSPGE++ILPRN H+SAISAMVLSGA PKYIIP+Y ++W
Sbjct: 124 SETWFLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDW 183

Query: 215 DIAGGITPLQVEKAIKELEMEGHKPAAVFVTSPTYNGICSNLNEISQLCHCRKIPLIADE 274
           DIAGG+TPLQV  AI+ELE+EG K AAVF+TSPTY+G+CSNL++IS LCH RKIPLI DE
Sbjct: 184 DIAGGVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDE 243

Query: 275 AHGAHLGFHPQLPLSALKQNADLVVQSTHKVLSSLTQSSMLHMSGNIVDRERISRCXXXX 334
           AHGAHLG H +LP SAL+Q ADL VQSTHKVLSSLTQSSMLHMSG+IVD+E+ISRC    
Sbjct: 244 AHGAHLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTL 303

Query: 335 XXXXXXXXXXXXXXXXXXXXXENPETIFHETMKLAIESKELIKKIPGITWLELPPSFCKF 394
                                E+P  +F + ++LA E+K L+K+IPG++ LE   SF  F
Sbjct: 304 QSTSPSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLE-NSSFPNF 362

Query: 395 PAKDPLRLTVGFWQLGLSGCKAGDILYRNHGIVPELVESRSITLAINLGTCKEHVQRLVS 454
           PA DP RLTVGFW+LGLSG +A +IL R+ GIV ELV  +SIT  +NLGTC++HVQRL+S
Sbjct: 363 PAFDPFRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLS 422

Query: 455 GLEELSA--SSLKTGTEEKVKNGENIPFTDISMSLNPRDAFFAKKRRVSIGES 505
           G + L+A  SS++   ++ +   ++ PF DI MSL PRDAFFA KR+V + ES
Sbjct: 423 GAKYLAAVYSSIQQRKDKVLT--DHAPFDDIIMSLTPRDAFFASKRKVMVKES 473


>IMGA|Medtr4g092740.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19458427-19462305 E
           EGN_Mt090430 20090702
          Length = 577

 Score =  546 bits (1407), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/471 (59%), Positives = 346/471 (73%), Gaps = 6/471 (1%)

Query: 38  SPERSTSKPEKKQQRSSQGKSISSRKDD-SLISNFHVSQPDTSPPLVTXXXXXXXXXXXT 96
           S ERS + PE  +  S    S  S  ++ +  SN    +    PPLV+           T
Sbjct: 44  SQERSIALPEYGKYESVGTVSTESITNNPNECSNSPEIRQSGLPPLVSALKASAEENAAT 103

Query: 97  FHFPGHNRGQAAPVSLTQLIGLKPFIHDLTGLQVLDKLFSPEGPIVEAQKQAAKLFGSLE 156
           FHFPGHNRG AAP S+T+LIG +P++HDL  L  LD LF P+GPI+EAQ +A+KLFGS E
Sbjct: 104 FHFPGHNRGHAAPASMTRLIGRRPYVHDLPELPELDNLFCPQGPILEAQTEASKLFGSSE 163

Query: 157 TWFLVGGTTSGIQAAIMATCSPGEHIILPRNCHVSAISAMVLSGAIPKYIIPEYDSEWDI 216
           TWFLVGGTT GIQAAIMATCSPGE +ILPRNCH+SAISAMVLSGA+PKYI+P+Y ++WDI
Sbjct: 164 TWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIVPDYKNDWDI 223

Query: 217 AGGITPLQVEKAIKELEMEGHKPAAVFVTSPTYNGICSNLNEISQLCHCRKIPLIADEAH 276
           AGG+TPLQV  AI+ELE+EG K AAVF+TSPTY+GICSNL++IS+LCH RKIPLI DEAH
Sbjct: 224 AGGVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHSRKIPLIVDEAH 283

Query: 277 GAHLGFHPQLPLSALKQNADLVVQSTHKVLSSLTQSSMLHMSGNIVDRERISRCXXXXXX 336
           GAHLGFH +LP SAL+Q ADL VQSTHKVL SLTQSSMLHMSG+IVD+E+ISRC      
Sbjct: 284 GAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQS 343

Query: 337 XXXXXXXXXXXXXXXXXXXENPETIFHETMKLAIESKELIKKIPGITWLELPPSFCKFPA 396
                              E+P+T+F++ ++LA E+K  +K+ PGI  LE   SF    A
Sbjct: 344 TSPSYLLLASLDAARAQLSESPDTVFNQAIELANEAKSSLKRFPGILVLE-NSSFLTIRA 402

Query: 397 KDPLRLTVGFWQLGLSGCKAGDILYRNHGIVPELVESRSITLAINLGTCKEHVQRLVSGL 456
            DPLRLTVGFW+LGLSG +A +ILYR+ GIV ELV ++SIT A+NLGTC++HVQRL+SG+
Sbjct: 403 IDPLRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGI 462

Query: 457 EELSAS--SLKTGTEEKVKNGENIPFTDISMSLNPRDAFFAKKRRVSIGES 505
           + L+A+  S++   +E +   E+ PF DI  SL PRDAFFA KR+V+I ES
Sbjct: 463 KHLAATYPSIQQPKDEVLT--EHTPFDDIITSLTPRDAFFASKRKVTIKES 511


>IMGA|Medtr4g092750.1 Lysine decarboxylase;
           chr04_pseudomolecule_IMGAG_V3 19463138-19466751 E
           EGN_Mt090430 20090702
          Length = 599

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/469 (58%), Positives = 345/469 (73%), Gaps = 6/469 (1%)

Query: 40  ERSTSKPEKKQQRSSQGKSISSRKDDS-LISNFHVSQPDTSPPLVTXXXXXXXXXXXTFH 98
           ERST+  E +Q+ S    + +S  +++ L SN  V Q    PPLV+           +FH
Sbjct: 75  ERSTALQEYEQEESIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENAASFH 134

Query: 99  FPGHNRGQAAPVSLTQLIGLKPFIHDLTGLQVLDKLFSPEGPIVEAQKQAAKLFGSLETW 158
           FPGHNRG AAP SLTQLIG++P+ HDL+ +  LD LF P+GPI+EAQ++A+KLFGS ETW
Sbjct: 135 FPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETW 194

Query: 159 FLVGGTTSGIQAAIMATCSPGEHIILPRNCHVSAISAMVLSGAIPKYIIPEYDSEWDIAG 218
           FLV GTT G+QAAIMATCSPGE++ILPRN H+SAISAMVLSGA PKYIIP+Y ++WDIAG
Sbjct: 195 FLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDWDIAG 254

Query: 219 GITPLQVEKAIKELEMEGHKPAAVFVTSPTYNGICSNLNEISQLCHCRKIPLIADEAHGA 278
           G+TPLQV  AI+ELE+EG K AAVF+TSPTY+G+CSNL++IS LCH RKIPLI DEAHGA
Sbjct: 255 GVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGA 314

Query: 279 HLGFHPQLPLSALKQNADLVVQSTHKVLSSLTQSSMLHMSGNIVDRERISRCXXXXXXXX 338
           HLG H +LP SAL+Q ADL VQSTHKVLSSLTQSSMLHMSG+IVD+E+ISRC        
Sbjct: 315 HLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTLQSTS 374

Query: 339 XXXXXXXXXXXXXXXXXENPETIFHETMKLAIESKELIKKIPGITWLELPPSFCKFPAKD 398
                            E+P  +F + ++LA E+K L+K+IPG++ LE   SF  FPA D
Sbjct: 375 PSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLE-NSSFPNFPAFD 433

Query: 399 PLRLTVGFWQLGLSGCKAGDILYRNHGIVPELVESRSITLAINLGTCKEHVQRLVSGLEE 458
           P RLTVGFW+LGLSG +A +IL R+ GIV ELV  +SIT  +NLGTC++HVQRL+ G + 
Sbjct: 434 PFRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLLGAKH 493

Query: 459 LSA--SSLKTGTEEKVKNGENIPFTDISMSLNPRDAFFAKKRRVSIGES 505
           L+A  SS++   ++ +   ++ PF DI MSL PRDAFFA KR+V + ES
Sbjct: 494 LAAVYSSIQQRKDKVLT--DHAPFDDIIMSLTPRDAFFASKRKVMVKES 540


>IMGA|Medtr5g103840.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 41617043-41617512 H
           EGN_Mt090430 20090702
          Length = 91

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query: 96  TFHFPGHNRGQAAPVSLTQLIGLKPFIHDLTGLQVLDKLF 135
           +FHF GHNRG AAP SLTQLIG++ + HDL  +  L  LF
Sbjct: 45  SFHFRGHNRGHAAPSSLTQLIGIRLYAHDLYNILELVNLF 84