Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (243 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g038130.1 hypothetical protein chr05_pseudomolecule_I...   212   1e-55

>IMGA|Medtr5g038130.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 16079339-16083640 F
           EGN_Mt090430 20090702
          Length = 214

 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 131/212 (61%), Gaps = 32/212 (15%)

Query: 31  DQTTNGGSGSRVLLVFKEKPEGSNLTFDCSPSGACVPCQYSEKTDEKYRCSETGYRIPLK 90
           D     G G RVL+ FKEKP GSNLTFDC+PSG CVPC YSEK DEKYRCSETGYRIP K
Sbjct: 30  DSENGHGFGRRVLMSFKEKPSGSNLTFDCAPSGPCVPCIYSEKGDEKYRCSETGYRIPFK 89

Query: 91  CIETKDNIKNGNDKKSQKTRSVIEISNENANPHAMLHD----AASNEQRSLLDDSSTLED 146
           C E KD+ K+    K QK RS +EISN +A PH + H       S  QR+LLDDSS  ++
Sbjct: 90  CEELKDSTKDAKKTKPQKNRSTLEISNSSAKPHIVEHVYGELITSQSQRTLLDDSSASDN 149

Query: 147 GSQAYITYRSCIPPVNEEKLSVLGFEAFCEIAVFKNCLTECGYXCLAVNHDAQGIILCLF 206
            SQAY+TYRSCIP   EEKLSVLGFE+                           +++ L 
Sbjct: 150 KSQAYVTYRSCIPADTEEKLSVLGFES---------------------------VVIFLL 182

Query: 207 LISGSVVYFRRKQTVTMSG-VGGGRIQMNSRF 237
           LISGS +Y R+K+   MSG V  GR Q NSR+
Sbjct: 183 LISGSFIYLRKKKAAAMSGYVAAGRGQTNSRY 214