Jatropha Genome Database

JcCA0317171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.10 + phase: 0 /pseudo/partial
         (575 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g103770.1 Zinc finger, FYVE/PHD-type chr04_pseudomole...   135   7e-32

>IMGA|Medtr4g103770.1 Zinc finger, FYVE/PHD-type
           chr04_pseudomolecule_IMGAG_V3 22439778-22442256 E
           EGN_Mt090430 20090702
          Length = 343

 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 117/245 (47%), Gaps = 33/245 (13%)

Query: 164 NGKHVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXX--XXXX 221
           +G HVK+++     ++KR        K+Q Q  K +P   KSV +K NKK          
Sbjct: 36  DGLHVKTNTNRRNVDSKR-------QKIQSQNGKSSPLVGKSVNLKGNKKASSKVPQPRV 88

Query: 222 XXQKNKKVTIVVPLRRSPRKAKYNSL---------------------QNXXXXXXXXXXX 260
             + NK +  +VPLRRS RKAK   L                     +            
Sbjct: 89  ISRNNKNIPPIVPLRRSTRKAKSLYLHKQKIGGRKKGTQSKKNVGRKKGKQSKSKVVTSQ 148

Query: 261 XXXXXXXXXXXXXXTSFRKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSESVS 320
                         T  RK RT+ ++ YWL GL  S+KP DERVM F+ KK +    S  
Sbjct: 149 RSKGTTGQHKMFAVTPARKTRTKLFNCYWLKGLRFSQKPNDERVMLFKEKKHIISDVSTG 208

Query: 321 LDQH-KCPLCHEAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPP 379
           L ++ +C  C   G  S  NYI+CE+C +WFHGDAFGL VE + +LIGFRCH CR S  P
Sbjct: 209 LFEYPEC--CLRCGDVSASNYIACEICEDWFHGDAFGLTVENARQLIGFRCHACRGSIAP 266

Query: 380 VCPFL 384
           +CP +
Sbjct: 267 ICPHV 271