Jatropha Genome Database

JcCA0317161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317161.20 - phase: 0 
         (459 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g122550.1 hypothetical protein chr02_pseudomolecule_I...   688   0.0  

>IMGA|Medtr2g122550.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 29432326-29436378 E
           EGN_Mt090430 20090702
          Length = 437

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/441 (76%), Positives = 362/441 (82%), Gaps = 7/441 (1%)

Query: 20  MLERVLSSRRASPHPDDAVSDNDTLPLSGDESKTKKQSLSLLAANYLSRLSHXXXXXXXX 79
           MLER LSSRR + H D    D        D+SKTKKQ +     N  S            
Sbjct: 1   MLERTLSSRRGNSHGDSDDDDLINA----DDSKTKKQHILFRITNRASTFLSQTRHYVPC 56

Query: 80  XXXXXXXXXXXXXXXXFHSRNFVCVSP---FDPAIRVGFFGLDGLESDFGVLGVPCCRSK 136
                           F SR+FVC+S    F PA R  FF LDGL+SDFG LGVPCCRSK
Sbjct: 57  LTIAFLLLFAFSFFFFFTSRSFVCISSNAFFKPASRAAFFDLDGLDSDFGALGVPCCRSK 116

Query: 137 HGKKVEWTAKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLWFIARWLKPDLMIESGA 196
           HGK VEWT+KDLLKGLEEFVPIYETRPIKNNMYGMG DHSFGLWFIARWLKPDLMIESGA
Sbjct: 117 HGKTVEWTSKDLLKGLEEFVPIYETRPIKNNMYGMGLDHSFGLWFIARWLKPDLMIESGA 176

Query: 197 FKGHSTWVLRQAMPDMPIISLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVEWKSV 256
           FKGHSTWVLRQAMPD  I+SLSPRHPEKYLKKGPAYVDGNCTY+AGKDFVDFGSV+W  V
Sbjct: 177 FKGHSTWVLRQAMPDTRIVSLSPRHPEKYLKKGPAYVDGNCTYYAGKDFVDFGSVDWSKV 236

Query: 257 MKKHGITDLSRVLIFFDDHQNELKRVRQALSAGFRHLVFEDNYDTGTGDHYSLRQICDQS 316
           M++HGI DLSRVLIFFDDHQNELKR+ QAL AGFRHLVFEDNYDTGTGDHYSLRQICDQ 
Sbjct: 237 MREHGIKDLSRVLIFFDDHQNELKRIEQALKAGFRHLVFEDNYDTGTGDHYSLRQICDQF 296

Query: 317 YIRGGGHSCFRDSDESRIRSKRKKFWEKAVDVDELCGPNEAWWGVRGWMRDNFNHSNKPI 376
           YIRGGGHSCF+DSDE+RIRSKRKKFWEKAVD +ELCGP EAWWGVRG+MRDNFNHSNKPI
Sbjct: 297 YIRGGGHSCFKDSDEARIRSKRKKFWEKAVDTEELCGPGEAWWGVRGYMRDNFNHSNKPI 356

Query: 377 SYLEHFQNSRFIESILDVYWELPPVAGPSLTHQTRYDPARTTPPIVEDGRYGLFQRIGLG 436
           SY +HFQNSR++ESILDVYWELPPVAGPSLTHQTRYDPAR   PIVEDGRYGLFQR+GLG
Sbjct: 357 SYAQHFQNSRYVESILDVYWELPPVAGPSLTHQTRYDPARAPNPIVEDGRYGLFQRLGLG 416

Query: 437 RLENSVFNGYTQMVYLQISEQ 457
           +L+NSVFNGYTQMVYLQISEQ
Sbjct: 417 KLDNSVFNGYTQMVYLQISEQ 437