Jatropha Genome Database

JcCA0317081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.30 - phase: 0 
         (335 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase chr05_pseu...   377   e-105

>IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase
           chr05_pseudomolecule_IMGAG_V3 23774075-23769436 E
           EGN_Mt090430 20090702
          Length = 326

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 237/329 (72%), Gaps = 8/329 (2%)

Query: 6   AEQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYL 65
            E+ SL+ D +  SGG  V DGG AT+LE+HGA +NDPLWSA CL+  PHLI+ VH++YL
Sbjct: 3   GEKKSLLQDLIENSGGCVVTDGGFATQLEKHGAFINDPLWSAICLIKQPHLIKKVHMEYL 62

Query: 66  EAGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNN 125
           EAGAD+++T+SYQATI GF +KG S +EGE+LL++SV++A EARD ++   +     GN 
Sbjct: 63  EAGADILVTSSYQATIPGFLSKGLSIEEGESLLQRSVKLAVEARDSFWSSAKRNP--GN- 119

Query: 126 DNRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADL 185
                K R  LVAAS+GSYGAYLADGSEY G+YG D++L  LKDFHRRR+QVL ++G DL
Sbjct: 120 -----KYRRALVAASIGSYGAYLADGSEYRGLYGPDVSLVKLKDFHRRRLQVLVEAGPDL 174

Query: 186 IAFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVA 245
           +AFET+PNK+EAQA  +LLEE N++IP+W  F S DG N  SG+S   C  +    +KV 
Sbjct: 175 LAFETIPNKLEAQACVELLEEINVQIPSWICFTSVDGENAPSGESFQYCLEVINKSNKVE 234

Query: 246 AVGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVN 305
           AVGINC PP F+  LI   K++T+K I++YPNSGE +D   K+W+ +    D+DF  Y  
Sbjct: 235 AVGINCAPPHFMESLIPKFKQLTNKAIVVYPNSGEVWDGIAKKWLPSKCFHDDDFGFYAT 294

Query: 306 KWCEIGASLIGGCCRTTPKTIRAIYWTLR 334
           +W E+GA +IGGCCRTTP TI+ I   LR
Sbjct: 295 RWRELGAKIIGGCCRTTPSTIQIISNALR 323