Jatropha Genome Database
- JcCA0317001.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317001.30 + phase: 0
(236 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g022840.1 UPF0563 protein, related chr05_pseudomolecu... 190 4e-49
IMGA|Medtr5g022830.1 UPF0563 protein, related chr05_pseudomolecu... 134 4e-32
IMGA|Medtr3g143020.1 NADH:flavin oxidoreductase/NADH oxidase chr... 133 6e-32
IMGA|Medtr6g083940.1 Protein FAM119A, related chr06_pseudomolecu... 53 1e-07
>IMGA|Medtr5g022840.1 UPF0563 protein, related
chr05_pseudomolecule_IMGAG_V3 8917734-8918730 H
EGN_Mt090430 20090702
Length = 161
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 104/126 (82%)
Query: 103 VLDNIRKVCNLNKLKCNVLGLTWGIWDEAIFSLKPTIILGADVLYEASXXXXXXXXXXXX 162
VLDN+R+VC+LNKL+CNVLGLTWG+WD +IF L+PTIILGADVLY+++
Sbjct: 34 VLDNMRRVCDLNKLECNVLGLTWGVWDSSIFDLRPTIILGADVLYDSNAFDDLFATVTFL 93
Query: 163 XQNSPGSVLITTYHNRSGHHLIEFLMVKWGLKCVKLLDGFSFMPSYKASGLNGNIQLAEI 222
QNSPGS+ IT+YHNRSGHHLIEFLM KWGLKC+KLLDGFS +PS+KAS L+GNIQL EI
Sbjct: 94 LQNSPGSIFITSYHNRSGHHLIEFLMRKWGLKCLKLLDGFSILPSFKASQLSGNIQLVEI 153
Query: 223 VLNSKN 228
L SK+
Sbjct: 154 ALTSKD 159
>IMGA|Medtr5g022830.1 UPF0563 protein, related
chr05_pseudomolecule_IMGAG_V3 8916369-8917387 E
EGN_Mt090430 20090702
Length = 111
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 81/109 (74%), Gaps = 7/109 (6%)
Query: 1 MQGKDGDEEPSDRH-----MSTISRHAFGDDEEQPAFSISIIENMKEEYGLFVWPCSVIL 55
M+ D +EE + MSTIS+H F DD E +ISIIENM E+YGL+VWP +VIL
Sbjct: 1 MEENDRNEESDSDNTATMTMSTISQHNFNDDSE--TLTISIIENMSEDYGLYVWPSAVIL 58
Query: 56 AEYVWQQRDRFSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNRLEVL 104
EY+WQ++ RFSGA VVELGAGT LPGL AAK+G++VTLTDDS RLEV
Sbjct: 59 GEYIWQEKHRFSGANVVELGAGTCLPGLVAAKVGANVTLTDDSTRLEVF 107
>IMGA|Medtr3g143020.1 NADH:flavin oxidoreductase/NADH oxidase
chr03_pseudomolecule_IMGAG_V3 36784177-36787614 E
EGN_Mt090430 20090702
Length = 381
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 81/113 (71%), Gaps = 5/113 (4%)
Query: 117 KCNVLGLTWGIWDEAIFSLKPTIILGADVLYEASXXXXXXXXXXXXXQNSPGSVLITTYH 176
+ ++ GLTWG+W +IF L+ TIILGADVLY+++ QNSPGS+ IT+YH
Sbjct: 144 RISIKGLTWGVWGSSIFDLRLTIILGADVLYDSNAFDDLFATVTFLLQNSPGSIFITSYH 203
Query: 177 NR-----SGHHLIEFLMVKWGLKCVKLLDGFSFMPSYKASGLNGNIQLAEIVL 224
NR S HLIEFLM KWGLKC+KLLDGFS +PS+KAS L+GNI+L EI L
Sbjct: 204 NRRYFSFSWDHLIEFLMRKWGLKCLKLLDGFSILPSFKASQLSGNIKLVEIAL 256
>IMGA|Medtr6g083940.1 Protein FAM119A, related
chr06_pseudomolecule_IMGAG_V3 17252670-17256299 E
EGN_Mt090430 20090702
Length = 268
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 45 GLFVWPCSVILAEYVWQQRDR----FSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNR 100
G +W ++L +++ D G ++VELG+G L G AA LG +V LTD +R
Sbjct: 86 GSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAALLGGEVILTDLPDR 145
Query: 101 LEVLDNIRKVCNLNKLKCNVLG------LTWG-IWDEAIFSLKPTIILGADVLY 147
+ +L RK N ++ G LTWG D+ + P ILG+DV+Y
Sbjct: 146 MRLL---RKNIETNMKHISLRGSITATELTWGDDPDQELIDPTPDYILGSDVVY 196