Jatropha Genome Database

JcCA0317001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.20 - phase: 0 
         (215 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g089300.1 hypothetical protein chr08_pseudomolecule_I...   249   7e-67

>IMGA|Medtr8g089300.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 19158314-19161878 E
           EGN_Mt090430 20090702
          Length = 201

 Score =  249 bits (636), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 133/152 (87%)

Query: 64  GHKAKAMPQESEVSLAADAFTHFKHLLLPITDRNPYLSEGTRQXXXXXXXXXKKYGADIT 123
           G   KA PQE EV++A D+FT FKHLLLPITDR PYLSEGT+Q          KYGADIT
Sbjct: 50  GIIVKAKPQEPEVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADIT 109

Query: 124 VVVIDEKERESLPEHETQMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIGDVADELNLD 183
           VVVIDE+++ESLPEHETQ+SSIRWHLSEGG +++KLLERLG+G+KPTAIIGDVADELNLD
Sbjct: 110 VVVIDEQQKESLPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIGDVADELNLD 169

Query: 184 LVVISMEAIHSKHVDANLLAEFIPCPVLLLPL 215
           LVVISMEAIH+KH+DANLLAEFIPCPV+LLPL
Sbjct: 170 LVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 201