Jatropha Genome Database

JcCA0316871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316871.30 - phase: 0 
         (122 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160610.1 Mitochondrial ATP synthase g subunit chr04_...   215   4e-57
IMGA|Medtr4g160620.1 Mitochondrial ATP synthase g subunit chr04_...   207   9e-55
IMGA|Medtr2g121660.1 Mitochondrial ATP synthase g subunit chr02_...   177   1e-45
IMGA|Medtr5g071970.1 Mitochondrial ATP synthase g subunit; Vps52...   101   1e-22

>IMGA|Medtr4g160610.1 Mitochondrial ATP synthase g subunit
           chr04_pseudomolecule_IMGAG_V3 40743352-40739298 E
           EGN_Mt090430 20090702
          Length = 122

 Score =  215 bits (547), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 111/120 (92%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL  LQSKACQAS+ ++KHG+ YYKQLLEQNKQYIQEPAT+EKCNLL+KQL YTRLA
Sbjct: 1   MASKLKALQSKACQASQLISKHGSGYYKQLLEQNKQYIQEPATIEKCNLLAKQLLYTRLA 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP R E+FWKELDYVK+LW+NRQ+LKVEDAGIAALFGLEC+ W+CAGEIVGRGFT TGY
Sbjct: 61  SIPVRCEAFWKELDYVKHLWRNRQDLKVEDAGIAALFGLECYAWYCAGEIVGRGFTFTGY 120


>IMGA|Medtr4g160620.1 Mitochondrial ATP synthase g subunit
           chr04_pseudomolecule_IMGAG_V3 40747713-40744393 E
           EGN_Mt090430 20090702
          Length = 121

 Score =  207 bits (527), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 108/119 (90%)

Query: 3   SKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLASI 62
           SKL QL SK CQAS+F+ KHGT+Y+KQLLE+NK+YIQEPATVEKC LL+KQLFYTRLASI
Sbjct: 2   SKLQQLTSKVCQASQFITKHGTSYHKQLLEKNKEYIQEPATVEKCQLLAKQLFYTRLASI 61

Query: 63  PNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGYY 121
           PNR ESF KELDYVK +WKN+Q+LK+EDAGIA LFGLEC+ WFCAG+IVGRGFT TGYY
Sbjct: 62  PNRCESFHKELDYVKQIWKNKQDLKIEDAGIAVLFGLECYAWFCAGQIVGRGFTFTGYY 120


>IMGA|Medtr2g121660.1 Mitochondrial ATP synthase g subunit
           chr02_pseudomolecule_IMGAG_V3 28913824-28915060 H
           EGN_Mt090430 20090702
          Length = 217

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 95/121 (78%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           M SK+ +LQSKA QAS  VA H  +++K L+E+NK ++QEP T+EKC  L+KQLFYTRLA
Sbjct: 96  MTSKIPELQSKATQASAEVANHINSHFKLLMERNKHHVQEPPTIEKCQSLAKQLFYTRLA 155

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP+RY+SFWKELD  KN+  N  EL +E  G AALFGLEC+ W+C GEIVGRGFT TGY
Sbjct: 156 SIPHRYDSFWKELDSAKNIMNNMNELNMEKIGTAALFGLECYLWYCGGEIVGRGFTFTGY 215

Query: 121 Y 121
           Y
Sbjct: 216 Y 216


>IMGA|Medtr5g071970.1 Mitochondrial ATP synthase g subunit;
           Vps52/Sac2 chr05_pseudomolecule_IMGAG_V3
           25569822-25570986 E EGN_Mt090430 20090702
          Length = 115

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 68/100 (68%), Gaps = 8/100 (8%)

Query: 29  QLLEQNKQY----IQEPATVEKCNLLSKQL---FYTRLAS-IPNRYESFWKELDYVKNLW 80
           ++L++   Y    ++    V   N++ KQL   F  R    IP R E+FWKEL Y K+LW
Sbjct: 14  KILQEKSMYMGLRLKNRKIVSARNIVVKQLAAQFLCRSPVLIPVRCEAFWKELHYFKHLW 73

Query: 81  KNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           +NRQ+LKVEDAGIAALFGLE + W+CAGEIVG+GFT  GY
Sbjct: 74  RNRQDLKVEDAGIAALFGLEYYAWYCAGEIVGKGFTFPGY 113