Jatropha Genome Database

JcCA0316711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316711.10 + phase: 0 /partial
         (550 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086720.1 PWWP; Regulation of nuclear pre-mRNA protei...   395   e-110
IMGA|Medtr4g101070.1 PWWP chr04_pseudomolecule_IMGAG_V3 21771090...   105   8e-23

>IMGA|Medtr1g086720.1 PWWP; Regulation of nuclear pre-mRNA protein
           chr01_pseudomolecule_IMGAG_V3 17263033-17247045 E
           EGN_Mt090430 20090702
          Length = 1381

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 274/568 (48%), Positives = 326/568 (57%), Gaps = 67/568 (11%)

Query: 1   MAPSXXXXXXXXXXXXXXXXQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVY 60
           MAPS                QWKVGDLVLAKVKGFPAWPATVSEPEKWGYS D KKVLV+
Sbjct: 1   MAPSRRKGGSKAAAAAAAARQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSTDLKKVLVF 60

Query: 61  FFGTQQIAFCNPADVEAFTEEKKQSLLVKRQGKGADFVRAVQEIIDSYEKSKKTNQADDL 120
           FFGTQQIAFCNPADVEAFTEEKK S LVKRQGKGADFVRAV+EI+DSYEK KK  Q  + 
Sbjct: 61  FFGTQQIAFCNPADVEAFTEEKKLS-LVKRQGKGADFVRAVKEIVDSYEKLKKERQLGEA 119

Query: 121 NSGEEVTLANGGNSMESSADFESKGRTETSEATV-------TGRNDPSLGSSVAPDVSKI 173
           N G  V  AN       S  F S  + +T    +       +  +D      V P     
Sbjct: 120 NCGGNVADAN------VSKPFNSYNKDQTDAPALSPTLPMKSSNSDMDSHGLVCPAEDDS 173

Query: 174 GSLL-----DKEALLEQPTDNV--VVTAKPVITTYTSRKRSGG-LRTRKRATEKQDXXXX 225
            ++L     D EA  E  T+NV  V +AKP+  TY+SRKRS   L  +   T++      
Sbjct: 174 AAVLKDESHDNEASKEL-TENVASVHSAKPL--TYSSRKRSAAELCPQGFITDRH----- 225

Query: 226 XXXXXXXXXXXXXQNLMIPSKLDGDMNVGDASTEVILDRSLRRNKRVRKSPDASEWDDVD 285
                        Q  M P   D   N G   T      S+RRNKR+RKSPD +  +D D
Sbjct: 226 -MPVRKNRSSSRVQPFMFPCN-DSGKNAGSQLTNAAQGASVRRNKRLRKSPDLAGCNDFD 283

Query: 286 SSAHVSNGSIE--DNSSEIVTVDSDSLSLNEGSTIDSESKPEHSETVVECLEGDVELSKG 343
           SSA V NGS+E  DNSSEI+T DSD  SLNEGS +DS  K  H+ET  EC E +VEL+KG
Sbjct: 284 SSALVLNGSMEDKDNSSEILTNDSDEFSLNEGSAMDSNFK--HTET-SECPE-EVELNKG 339

Query: 344 LDFQIKAVVIKKKRKPNRKRVTNEAAEQHVRLETEADLDAGVHSSSQNSQS-CENLNERH 402
           LD +IK VV KKKR PNRKR TN+ ++  +R+E E     GV +SSQ+SQ+ C N  ER 
Sbjct: 340 LDLKIKGVVNKKKRNPNRKRATNDTSKPTIRVEEE----LGVRNSSQSSQNICRNSEERC 395

Query: 403 NKEDGDEHLPLVKRARVRMGKLXXXXXXXXXXXXXXXKISHGVAPSEVHNGLCPVEERSP 462
            ++DGDEHLPLVKR RVRMGK                 I H    S      C  +  SP
Sbjct: 396 FEQDGDEHLPLVKRWRVRMGK-------SSSTEGELNSIPHTPGKS------CKEDINSP 442

Query: 463 NEVAVAMVEQIGPPTNFNDDCSADKGLFSVKGAVDNASTQKVFVQIPANRSQLSIVKENQ 522
            ++  +        +N  +  SAD G   + G +DN S  K F   P   +Q+   K++Q
Sbjct: 443 PQMIAS--------SNCENRGSADVGSSVLIGTMDNVSPSKNFT--PCFENQVCNTKKDQ 492

Query: 523 SFGCSADGEAALPPSKRLHRALEAMSAN 550
           +F CS D EAALPPSKRLHRALEAMSAN
Sbjct: 493 TF-CSVDCEAALPPSKRLHRALEAMSAN 519


>IMGA|Medtr4g101070.1 PWWP chr04_pseudomolecule_IMGAG_V3
           21771090-21776400 E EGN_Mt090430 20090702
          Length = 857

 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 58/89 (65%)

Query: 21  QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVYFFGTQQIAFCNPADVEAFTE 80
             ++GDLVLAKVKGFPAWPA +S PE W  + D KK  V FFGT +IAF  P D++ FT 
Sbjct: 17  HLRLGDLVLAKVKGFPAWPAKISRPEDWEKAVDPKKYFVQFFGTNEIAFVAPTDIQVFTS 76

Query: 81  EKKQSLLVKRQGKGADFVRAVQEIIDSYE 109
           E K  L  +  GK   F +AV+EI  +++
Sbjct: 77  EYKSKLSARLHGKTKYFTQAVKEICAAFD 105