Jatropha Genome Database

JcCA0316521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.20 + phase: 0 
         (465 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g024110.1 Zinc finger, CCCH-type chr01_pseudomolecule...   218   4e-57
IMGA|Medtr8g090190.1 Zinc finger, CCCH-type chr08_pseudomolecule...   196   2e-50
IMGA|Medtr7g130110.1 Homeodomain-related chr07_pseudomolecule_IM...    49   6e-06

>IMGA|Medtr1g024110.1 Zinc finger, CCCH-type
           chr01_pseudomolecule_IMGAG_V3 5598014-5592926 E
           EGN_Mt090430 20090702
          Length = 433

 Score =  218 bits (556), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 225/449 (50%), Gaps = 70/449 (15%)

Query: 1   MKRSRKSNRVTWAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDL 60
           M+  RKS RV+W + ++LCQV+LFL+E+SPS+VG  +QD+LQ+K S +L    A   + L
Sbjct: 1   MRGLRKSKRVSWPSELDLCQVRLFLSEESPSQVGLNSQDHLQEKISSLLPQGEAGSDDIL 60

Query: 61  PPGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVL 120
           PPGFEG HT  +   ++ S IP I W  PPK+VL   W V AGEES E   Q  REMRVL
Sbjct: 61  PPGFEGTHT-SSQFDIKLSDIPVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVL 119

Query: 121 EAVFPRPSAIPPGPSISLDIEEEYYDDRLTXXXXXXXXXXXXXXXXSDSSAPVNNLSKSP 180
           EA++PR S+IPP P IS+D+++ +Y D                    D     + L  SP
Sbjct: 120 EAIYPRISSIPPNP-ISVDVDDSHYID--------GHIVVIPITPVEDGDVGADTL--SP 168

Query: 181 AILPTRLPNSAAHNIPELEPRTSKKRTHGVSPXXXXXXXXXXXXXXXXXXKSMEDGSQID 240
            IL                       ++ V+                   KS E G+ ID
Sbjct: 169 GIL---------------------DGSNTVTTMSMVSDVAAASVALTSLVKSSEHGNLID 207

Query: 241 TDLLIKILSDPKMIEKLINNKKPPLSPASSPTDGNLHNIFAGLKPIPKPVARSTSLPTVL 300
            +LL  IL++P++IEKL+ N     +  +  T G+  N+F+   P P P  +  +  +  
Sbjct: 208 PELLNNILNNPEVIEKLVRNYNVQNAQYAQNT-GSSSNVFS--HP-PNPFNQVETTTSSS 263

Query: 301 SSPIPGSLQPPSTLSEVQPTGTRMPSQPMTRPVVANLVQSKANSFLAQPVMAPKPIPNVM 360
           ++    S    +T  ++ PT   M +Q   RP +++ +        A PV  P       
Sbjct: 264 NAFSSTSSYTHTTGGQMAPT---MSTQWHRRPEISSAIA-------ATPVEVPS------ 307

Query: 361 PPPLGVMPVKDVNYIKNLIREHGSEKKD---------QNYNKIQNLGFAQNLKLREEKPK 411
                    KDVNY K+LI++HG +K++         QN   + N     N + +  KPK
Sbjct: 308 --------TKDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPK 359

Query: 412 FQKPCMYYNTPRGCRNGSNCLFRHDSSFQ 440
             KPC+++N+ RGCRNG+NC F+HD+SFQ
Sbjct: 360 ISKPCIFFNSSRGCRNGANCTFQHDASFQ 388


>IMGA|Medtr8g090190.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 19613197-19605047 E
           EGN_Mt090430 20090702
          Length = 557

 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 242/568 (42%), Gaps = 123/568 (21%)

Query: 1   MKRSRKSNRVTWAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDL 60
           MKR+RKSNRV+WA+  NLCQVKLFL+ED PSKVG   QD+L+ K S +L +S  +E  DL
Sbjct: 2   MKRARKSNRVSWASPANLCQVKLFLSEDYPSKVGLNLQDSLEAKASSMLCYS-TNESIDL 60

Query: 61  PPGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVL 120
           PPGFE  H   N  KV+ S IP I+W+ P   V S +W V AG+ES E + QKLRE+RVL
Sbjct: 61  PPGFESGH-FPNQSKVQFSHIPKIKWECPLSFVFSPNWLVAAGQESREKEVQKLREIRVL 119

Query: 121 EAVFPRPSAIPPGPSISLDIEEE-YYDDRLTXXXXXXXXXXXXXXXXSDSSAPVNNLSKS 179
           EAV+PRPSAIPP PS+SLD+EEE Y D+                    + +A VN     
Sbjct: 120 EAVYPRPSAIPPSPSVSLDVEEEEYDDNSTPLIPIIPIEEEESMTNLPELAAAVNT---H 176

Query: 180 PAILPTRLPNSAAHNIPELEPRTSKKRTH---------GVSPXXXXXXXXXXXXXXXXXX 230
           P + P  L    +        R S +            GVS                   
Sbjct: 177 PNVQPQNLHQHMSATTSISSDRNSSRTVSSDARLMPLAGVS-SSLEADAAAASEVVAAIL 235

Query: 231 KSMEDGSQIDTDLLIKILSDPKMIEKLINNKKPPLSPAS-------SPTDG--------- 274
           KS E    ID DLL+KIL+DPKMIE LIN      + AS       +PT G         
Sbjct: 236 KSNEQAGLIDMDLLVKILNDPKMIENLINEHGVAATTASSSSNSMVTPTSGLKAASTLDV 295

Query: 275 ----NLHNI---FAGLKPIPKPVAR---STSLPTVLSSPIPGSLQPPSTLSEVQPTGTRM 324
               N H     F+GLKP    V+    ++  PT L +P   S    S+  +   T    
Sbjct: 296 AASRNSHTSSVGFSGLKPAIPSVSSFNPTSGKPTTLFAPAIPSYSIVSSAHDKPATA--- 352

Query: 325 PSQPMTRPVVANLVQSKANSFLAQPVM---APKPIPNV------MPPPLGVMPVKDVNYI 375
            S P++RPV +  +      F++ P +    P+P+ N       MP  L   P  D    
Sbjct: 353 -SAPLSRPVSSKPISPSV--FMSTPTLEPHMPRPVNNNFHMSSPMPTALHTQPQLDSFLA 409

Query: 376 KNLIRE------------------------------------------HGSEKKDQNY-- 391
             + R                                             S  KD NY  
Sbjct: 410 SGVKRSASFTFSSSEQSTVPLPPSGNLHTVLNNTQPTASTKPYQTSSGSASAVKDVNYYK 469

Query: 392 NKIQNLGFAQNLKLREE----KPKFQKPCMYYNTPRG------------------CRNGS 429
           N I+  G     KL  +       FQ   + +N  +G                  CRNGS
Sbjct: 470 NLIRQHGADGQDKLDSQIGSHHSNFQDMKLAHNNNQGEVKYKSKKQCIYFNSSRGCRNGS 529

Query: 430 NCLFRHDSSFQFQTGGSIEAPGAKRIKL 457
           +C F+HD S +   G  +    AKR KL
Sbjct: 530 DCPFQHDVSAESGAGNFLGGQSAKRFKL 557


>IMGA|Medtr7g130110.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 30336569-30347313 E
           EGN_Mt090430 20090702
          Length = 1016

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 62  PGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLE 121
           P +E C  +K P            WKSP ++ L   W VGAG +S E   Q+ R  R  E
Sbjct: 523 PLWEKCKRVKIP------------WKSPAEVKLEDTWRVGAGVDSKEVHVQENRNRRDKE 570

Query: 122 AVFPRPSAIPPGPSISLDIEEEYYDDRLT 150
            ++     +P  P    D+E + YDD LT
Sbjct: 571 TIYKTAQEMPSNPKEPWDVEMD-YDDSLT 598