Jatropha Genome Database

JcCA0316451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316451.20 + phase: 0 
         (360 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g121780.1 NAD-dependent epimerase/dehydratase chr08_p...   126   2e-29
IMGA|Medtr4g084290.1 PTAC16 ; binding {Arab, putative chr04_pseu...    89   2e-18
IMGA|AC202568_1.1 NAD-dependent epimerase/dehydratase AC202568.9...    86   2e-17
IMGA|Medtr2g025270.1 NmrA-like chr02_pseudomolecule_IMGAG_V3 666...    58   6e-09

>IMGA|Medtr8g121780.1 NAD-dependent epimerase/dehydratase
           chr08_pseudomolecule_IMGAG_V3 28324020-28321852 E
           EGN_Mt090430 20090702
          Length = 292

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 41/306 (13%)

Query: 35  RFPSFNKYP----HARKLKSFDIKAQASGVTKYSSGAVEATPKEVDVKDDNLA-----FV 85
           R P+F+ +P    H     SF  K+    +T  +   +E +       DD+L+     FV
Sbjct: 8   RNPTFHTFPSHTHHFTAPSSFRTKS----LTIINFAKMEGSEITQQAVDDDLSLKKKVFV 63

Query: 86  AGATGRVGSRTVRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYVEKLELVEC 145
           AGATG  G R V +LL  GF V+AGVR   KA++         L+   S     L+ V+ 
Sbjct: 64  AGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKT--------SLSANPS-----LQFVKV 110

Query: 146 DL-EKPNEIGPALGNAS-VVICCIGASEKEVFDVTGPYRIDYQATKNLIDAASAAKVKHF 203
           D+ E  +++  A+G+ +  V+C  G   +  +D+  P+++D   T NL++A     V  F
Sbjct: 111 DVTEGSDKLAEAIGDDTEAVVCATGF--RPGWDLLAPWKVDNFGTVNLVEACRKVNVNRF 168

Query: 204 IMVSSLGTNKVGF-----PAAI-LNLFWGVLIWKRQAEEALIASGVPYTIVRPGGMERPT 257
           I++SS+  N         PA I LN+F   L+ K QAE  +  SG+ YTI+RPGG++   
Sbjct: 169 ILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKND- 227

Query: 258 DAYKETHNITLSEEDTLFGGQVSNLQVAELIAVMAKNRGLSYCKVVEVIAETTAPLTPME 317
                T N+ +  EDTL+ G +S  QVAE +AV +     +  KVVE++A   AP     
Sbjct: 228 ---PPTGNVVMEPEDTLYEGSISRDQVAE-VAVESLAYPEASYKVVEIVARPDAPKRAYH 283

Query: 318 ELLAKI 323
           +L   I
Sbjct: 284 DLFGSI 289


>IMGA|Medtr4g084290.1 PTAC16 ; binding {Arab, putative
           chr04_pseudomolecule_IMGAG_V3 17694881-17698120 E
           EGN_Mt090430 20090702
          Length = 553

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 24/260 (9%)

Query: 78  KDDNLAFVAGATGRVGSRTVRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYV 137
           KD +  FVAGATG+ G R  + LL+ GF VRAGV     AQ L +   Q K+    ++  
Sbjct: 97  KDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELGSAQELARLASQYKI--ISNEEA 154

Query: 138 EKLELVECDLEKPNEIGPALGNASVVICCIGASEKEVFDVTGP-YRIDYQATKNLIDAAS 196
           ++L  V+   +  + I  A+GNAS V+  IG +E       GP   +       +I AA 
Sbjct: 155 KRLNAVQSSFDDADSIAKAIGNASKVVVTIGLTE------NGPATEVSTSDALQVIQAAQ 208

Query: 197 AAKVKHFIMV----SSLGTNKVGFPAAILNLFWGVL-----IWKRQAEEALIASGVPYTI 247
            A V H  ++    + + T+       I + F  +      +  ++  + ++ + V YT+
Sbjct: 209 LAGVGHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTL 268

Query: 248 VRPGGMER--PTDAYKETHNITLSEEDTLFGG-QVSNLQVAELIAVMAKNRGLSYCKVVE 304
           ++    +   P  +Y   + + L EE+T     +V+  ++A L+A +  N  ++  KVV+
Sbjct: 269 IKTCLTDDFAPESSY---NVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQ 325

Query: 305 VIAETTAPLTPMEELLAKIP 324
           V ++  APL P++EL + IP
Sbjct: 326 VYSDPNAPLRPVDELFSTIP 345


>IMGA|AC202568_1.1 NAD-dependent epimerase/dehydratase AC202568.9
           6468-9775 E EGN_Mt090430 20090702
          Length = 324

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 21/173 (12%)

Query: 100 LLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYVEKLELVECDLEKPNEIGPAL-G 158
           LL+   + R  +R  +KA++L            G Q  EKL++ + D  K +++ P++  
Sbjct: 93  LLQRNIKSRLILRDLEKAKALF-----------GEQDEEKLQVFKGDTRKHDDLDPSMFE 141

Query: 159 NASVVICCIGAS---EKEVFDVTGPYRIDYQATKNLIDAASAAKVKHFIMVSSLGTNKVG 215
             + VICC G +    +   D   P R+D+   KNL+    ++ VK  I+VSS+G  K  
Sbjct: 142 GVTHVICCTGTTAFPSRRWDDENTPERVDWVGVKNLVSVLPSS-VKRVILVSSIGVTKCN 200

Query: 216 -FPAAILNLFWGVLIWKRQAEEALIASGVPYTIVRPGGMERPTDAYKETHNIT 267
             P +I+NLF GVL +K+  EE L  SG PYTI+RPG   R TD    ++++ 
Sbjct: 201 ELPWSIMNLF-GVLKYKKMGEEFLQNSGFPYTIIRPG---RLTDGPYTSYDLN 249


>IMGA|Medtr2g025270.1 NmrA-like chr02_pseudomolecule_IMGAG_V3
           6664479-6662735 E EGN_Mt090430 20090702
          Length = 412

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 37/249 (14%)

Query: 21  SGFLEKTSVRGHFLRFPSFNKYPHARKLKSFDIKAQASGVTKYS------------SGAV 68
           S F+   S++   L F +F+ +P +  +  F +K+      KY+            S  +
Sbjct: 8   STFITHPSLKHQTLSF-NFSSHPPSHFINLFKVKSNRP--IKYTKQKLKLYASLSQSEQI 64

Query: 69  EATPKEVDVKD--DNLAFVAGATGRVGSRTVRELLKLGFQVRAGVRSAQKAQ-SLVQSVK 125
           E TP    +K+  D    V G+TG +G   V+EL++ GF V A  R     + S+ +   
Sbjct: 65  ETTPTTFRIKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETT 124

Query: 126 QMKLNGEGSQY--VEKLELVECDLEKPNEIGPALGNASVVICCIGASEKEVFDVTGPYRI 183
             +L G    +  V  L++ + DL+    +G       VV+ C+ +    V D    ++I
Sbjct: 125 LNELRGANVCFSDVTNLDVFDEDLKN---LGVGF---DVVVSCLASRNGGVKD---SWKI 175

Query: 184 DYQATKNLIDAASAAKVKHFIMVSSLGTNK--VGFPAAILNLFWGVLIWKRQAEEALIAS 241
           DY+ATKN + A       HF+++S++   K  + F  A L L           +EA    
Sbjct: 176 DYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKL------EDELVKEAEKDD 229

Query: 242 GVPYTIVRP 250
              Y+IVRP
Sbjct: 230 RFSYSIVRP 238