Jatropha Genome Database

JcCA0316351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316351.20 + phase: 0 
         (137 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096520.1 V-type ATPase, 116 kDa subunit chr04_pseudo...   184   2e-47
IMGA|Medtr2g111390.1 V-type ATPase, 116 kDa subunit chr02_pseudo...   152   4e-38
IMGA|Medtr4g080140.1 V-type ATPase, 116 kDa subunit chr04_pseudo...   139   3e-34

>IMGA|Medtr4g096520.1 V-type ATPase, 116 kDa subunit
           chr04_pseudomolecule_IMGAG_V3 20339341-20328755 F
           EGN_Mt090430 20090702
          Length = 822

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 100/124 (80%), Gaps = 1/124 (0%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDLFRSE MQL+QLIIP+ESAH TVSYLGDLGLLQFKDLN+EKSPFQRTYAAQIK+CGEM
Sbjct: 14  MDLFRSEPMQLIQLIIPMESAHCTVSYLGDLGLLQFKDLNSEKSPFQRTYAAQIKRCGEM 73

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           ARKLRFFKEQM KAG SP   S TQ+++++D               MNAN +KLQRTYNE
Sbjct: 74  ARKLRFFKEQMFKAGVSPKG-STTQSDVNIDDIEIKLTEIESELTEMNANGEKLQRTYNE 132

Query: 121 LIEY 124
           L+EY
Sbjct: 133 LVEY 136


>IMGA|Medtr2g111390.1 V-type ATPase, 116 kDa subunit
           chr02_pseudomolecule_IMGAG_V3 26404399-26411923 E
           EGN_Mt090430 20090702
          Length = 517

 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 93/124 (75%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDL RSE M  VQLIIP ESAH  VSYLG+LGLLQF+DLNA+KSPFQRT+  Q+K+C EM
Sbjct: 11  MDLMRSEKMTFVQLIIPAESAHRAVSYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEM 70

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           +RKLRFFK+Q+ KAG   SS+++ Q +ID++               MN+N+DKL+++YNE
Sbjct: 71  SRKLRFFKDQVNKAGLMSSSRTLLQPDIDLEDLEVHLAEHEHELIEMNSNSDKLRQSYNE 130

Query: 121 LIEY 124
           L+E+
Sbjct: 131 LLEF 134


>IMGA|Medtr4g080140.1 V-type ATPase, 116 kDa subunit
           chr04_pseudomolecule_IMGAG_V3 16386140-16374800 H
           EGN_Mt090430 20090702
          Length = 820

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDL RSE M  VQ+IIP ESAH  ++YLG LGLLQF+DLNAEKSPFQRT+  Q+K+C EM
Sbjct: 11  MDLMRSEKMTFVQIIIPAESAHRIITYLGQLGLLQFRDLNAEKSPFQRTFVNQVKRCAEM 70

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           +RKLRF  +Q+ KAG   SS SV Q++ +++               MN+N++KLQ++YNE
Sbjct: 71  SRKLRFLMDQVNKAGIM-SSHSVLQSDTNLEDIETQLAEHEHEIIEMNSNSEKLQQSYNE 129

Query: 121 LIEY 124
           L+E+
Sbjct: 130 LLEF 133