Jatropha Genome Database

JcCA0316351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316351.10 + phase: 0 
         (306 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   449   e-127
IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   145   4e-35
IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   143   1e-34
IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   125   2e-29
IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   124   8e-29
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   123   1e-28
IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   101   5e-22
IMGA|Medtr7g068310.1 MCM chr07_pseudomolecule_IMGAG_V3 13980107-...    49   2e-06

>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
           EGN_Mt090430 20090702
          Length = 840

 Score =  449 bits (1154), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/283 (78%), Positives = 248/283 (87%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L +VMEQQTVSIAKAGIIASLNARTSVLACANP GSRYNPRLSVIDNIHLPPTLLSRFDL
Sbjct: 557 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDL 616

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           IYL+LDKADEQTDR LAKHIV+LH+++ E  +QDVLDI+TLT Y+SYARK IHP+LSDEA
Sbjct: 617 IYLMLDKADEQTDRRLAKHIVSLHYKDYENIEQDVLDISTLTDYVSYARKHIHPQLSDEA 676

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
           ++EL  GYV++R RG F GSSKKVITATPRQIESL+RLSEALARIR SE VEKHDV+EAF
Sbjct: 677 ADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRLSEALARIRFSESVEKHDVVEAF 736

Query: 203 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRX 262
           RLLEVAMQQSA D  TGTIDMDLITTGVSASERMRRE+L+  TRN+IMEK+Q+GG SMR 
Sbjct: 737 RLLEVAMQQSAMDTRTGTIDMDLITTGVSASERMRRESLIQDTRNMIMEKMQIGGRSMRL 796

Query: 263 XXXXXXXKKQSSGNEVHLQDLRNAVATLSSEGFVVTHGDSVKR 305
                  K QS G+E+HL DLR+AVATL+SEGFV   GDSVKR
Sbjct: 797 LEILEELKNQSPGSEIHLNDLRSAVATLASEGFVSMAGDSVKR 839


>IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 30928106-30922243 E
           EGN_Mt090430 20090702
          Length = 720

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 12/191 (6%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTVSIAKAGI  SLNART+VLA ANP   RY+ R +  +NI+LPP LLSRFDL
Sbjct: 455 IHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDL 514

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDV--LDIATLTTYISYARKRIHPRLSD 140
           ++LILD+AD   D  +A+H+V +H +N E+       L+ + L  YIS AR R+ P +  
Sbjct: 515 LWLILDRADMDNDLEMARHVVYVH-QNKESPALGFTPLEPSLLRAYISTAR-RLSPTVPR 572

Query: 141 EASEELTRGYVEMRR---RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHD 197
           E  E +   Y  +R+   +   P S       T R + S++R+S ALAR+R SE V + D
Sbjct: 573 ELEEYIASAYSSIRQEEAKSTTPHS-----YTTIRTLLSILRISAALARLRFSETVAQSD 627

Query: 198 VIEAFRLLEVA 208
           V EA RL++++
Sbjct: 628 VDEALRLMQMS 638


>IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 41900221-41894142 E
           EGN_Mt090430 20090702
          Length = 773

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 125/229 (54%), Gaps = 44/229 (19%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTV+IAKAGI ASLNAR SV+A ANPI   Y+  L+   NI LP +LLSRFDL
Sbjct: 416 IHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 475

Query: 83  IYLILDKADEQTDRHLAKHIVALH-----FENPETA------------------------ 113
           ++++LD+ D   DR +++H++ +H      +  E A                        
Sbjct: 476 LFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYN 535

Query: 114 ------------QQDVLDIATLTTYISYARKRIHPRLSDEASEELTRGYVEMRR-RGNFP 160
                       ++D L I  L  YI YA+ RI P L+DEASE++   Y E+R  + N  
Sbjct: 536 RMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIAAAYAELRNAKSNAK 595

Query: 161 GSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAM 209
                 ITA  R +E++IRLS A A+++LS  V K DV  A ++L  A+
Sbjct: 596 TGGTLPITA--RTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAI 642


>IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 28341732-28334597 H
           EGN_Mt090430 20090702
          Length = 842

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 52/262 (19%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L + MEQQ VSIAKAG++ASL++RTSVLA ANP+G  YN   +V +N+ +   LLSRFDL
Sbjct: 513 LLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 572

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQ--------------------QDVLDIAT 122
           I+++LDK DE  D+ +++HI++LH  + + +Q                     + +D+  
Sbjct: 573 IFILLDKPDELLDKRVSEHIMSLHAGSGQHSQASKKRRGDPPSDSRASASQNAEGIDLGV 632

Query: 123 --------------------------LTTYISYARKRIHPRLSDEASEELTRGYVEMRRR 156
                                     L  YI+YAR  + PR+S  A++ + + Y+++R  
Sbjct: 633 RSGSLISRLKLDRRRDSDFVPLPGQLLRKYIAYARSYVFPRMSKPAADIIQKFYLKLRDH 692

Query: 157 GNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAMQQSATDH 216
            N       +   T RQ+ESL+RL+EA AR+ L   +   D ++   +++ ++     D 
Sbjct: 693 -NVSADGTPI---TARQLESLVRLAEARARLDLRVEITAQDAMDVVEIMKESLYDKYIDE 748

Query: 217 STGTIDMDLITTGVSASERMRR 238
             G +D    + G+S  +  +R
Sbjct: 749 H-GVVDFGR-SGGMSQQKEAKR 768


>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
           EGN_Mt090430 20090702
          Length = 883

 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 111/200 (55%), Gaps = 21/200 (10%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQ++SI+KAGI+ SL AR SV+A ANPIG RY+       N+ L   ++SRFD+
Sbjct: 578 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDI 637

Query: 83  IYLILDKADEQTDRHLAKHIVALHFEN-PETAQQD----------------VLDIATLTT 125
           + ++ D  D  TD  LAK +V  HF++ P+ A  D                +L    L  
Sbjct: 638 LCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANNDSVSESQDASGMPIDPEILPQDLLKK 697

Query: 126 YISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALA 185
           Y++YA+  + PRL D    +L+  Y E+R+      S  + +    R IES+IR+SEA A
Sbjct: 698 YVTYAKLNVFPRLHDADLNKLSHVYAELRKE----SSHGQGVPIAVRHIESMIRMSEAHA 753

Query: 186 RIRLSELVEKHDVIEAFRLL 205
           R+ L + V + DV  A R+L
Sbjct: 754 RMHLRQHVIQEDVDMAIRVL 773


>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
           EGN_Mt090430 20090702
          Length = 929

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 111/200 (55%), Gaps = 21/200 (10%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQ++SI+KAGI+ SL AR SV+A ANPIG RY+       N+ L   ++SRFD+
Sbjct: 624 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDI 683

Query: 83  IYLILDKADEQTDRHLAKHIVALHFEN-PETAQQD----------------VLDIATLTT 125
           + ++ D  D  TD  LAK +V  HF++ P+ A  D                +L    L  
Sbjct: 684 LCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANNDSVSESQDASGMPIDPEILPQDLLKK 743

Query: 126 YISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALA 185
           Y++YA+  + PRL D    +L+  Y E+R+      S  + +    R IES+IR+SEA A
Sbjct: 744 YVTYAKLNVFPRLHDADLNKLSHVYAELRKE----SSHGQGVPIAVRHIESMIRMSEAHA 799

Query: 186 RIRLSELVEKHDVIEAFRLL 205
           R+ L + V + DV  A R+L
Sbjct: 800 RMHLRQHVIQEDVDMAIRVL 819


>IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr02_pseudomolecule_IMGAG_V3 1989579-2000046 H
           EGN_Mt090430 20090702
          Length = 581

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 109/194 (56%), Gaps = 9/194 (4%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+S+AKAG++ +L+ +T+V    NP G+ Y+P   +  N  L   LLSRFD+
Sbjct: 348 IHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGN-YDPDQPLSVNTTLSGPLLSRFDI 406

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLD---IATLTTYISYARKRIHPRLS 139
           + ++LD  +   D  ++ HI++    +  +  +D+ +   ++TL  YI Y ++   P L+
Sbjct: 407 VLVLLDTKNPDWDAVVSSHILSEAEPDRTSNDEDLANNWPLSTLKRYIHYVKENFRPVLT 466

Query: 140 DEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVI 199
            EA E +   Y +++R+     ++      T R +ESLIRL++A AR+     V + D I
Sbjct: 467 REA-ETVISSYYQLQRK----SATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 521

Query: 200 EAFRLLEVAMQQSA 213
            A   +E +M  SA
Sbjct: 522 TAVLCIESSMTTSA 535


>IMGA|Medtr7g068310.1 MCM chr07_pseudomolecule_IMGAG_V3
           13980107-13978408 H EGN_Mt090430 20090702
          Length = 220

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 123 LTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSE 182
           L  YI+YAR  + PR+S  A++ + + Y+++R        S      T RQ+ESL+RL+E
Sbjct: 51  LRKYIAYARSYVFPRMSKPAADIIQKFYLKLRDHN----VSADGTPITARQLESLVRLAE 106

Query: 183 ALARIRLSELVEKHDVIEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRR 238
           A AR+ L   +   D ++   +++ ++     D   G +D    + G+S  +  +R
Sbjct: 107 ARARLDLRVEITAQDAMDVVEIMKESLYDKYIDEH-GVVDFGR-SGGMSQQKEAKR 160