Jatropha Genome Database

JcCA0316341.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.20 - phase: 0 
         (248 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g104320.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG...   238   2e-63
IMGA|Medtr8g086620.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG...    65   2e-11
IMGA|Medtr2g011410.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG...    51   5e-07
IMGA|Medtr5g094840.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG...    49   3e-06

>IMGA|Medtr5g104320.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3
           41827212-41826484 E EGN_Mt090430 20090702
          Length = 238

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 105/203 (51%), Positives = 149/203 (73%)

Query: 46  RSRKQPVFIHHPRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPN 105
           RS ++   +     ++T PIVWF AILC IFS  LIFFGIAT+I YL++KP +P+FD  N
Sbjct: 36  RSSRKLAILKVDDQQKTKPIVWFAAILCFIFSFTLIFFGIATIICYLTLKPSNPLFDISN 95

Query: 106 ANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQR 165
           A+LN +YFDS +YFNGD    ANFSNPN+K+ V+FE   I+L++ +R+I  Q+++PFTQ+
Sbjct: 96  ASLNVVYFDSKQYFNGDFALQANFSNPNRKVHVKFESLYIQLFYSNRVIASQSIKPFTQK 155

Query: 166 RRETRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYSYWLHG 225
            +ETR E+V  IS+L+++P    + LQ+++Q+N++    +GTFKV+ N+ +LH S+WLH 
Sbjct: 156 PKETRYETVRFISTLLFMPQEVGVRLQRELQNNRLSCYAKGTFKVKVNMWILHSSFWLHS 215

Query: 226 RCEIEMTGPPTGVLVARSCKTKR 248
            C+IEMTGPP G LVAR C T R
Sbjct: 216 VCQIEMTGPPNGSLVARQCITTR 238


>IMGA|Medtr8g086620.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG_V3
           17789812-17788310 H EGN_Mt090430 20090702
          Length = 190

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 1/164 (0%)

Query: 62  TNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPEYFNG 121
           T P VW  AI+C IF++ +   GI   I Y+ I PR+P+    NA+L+ +  D       
Sbjct: 16  TKPFVWLAAIICTIFAIAVTITGIVVFIGYILIHPRAPIISVTNAHLDLLRNDHAGLLQT 75

Query: 122 DLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHIISSLV 181
            L+ +    N N K    F      L F  + I +     F   +  T      + SS +
Sbjct: 76  QLSIVVTAYNGNAKAHATFSKITFSLSFQGQGIAMLVADSFDVPKNSTNDLRYVVQSSSI 135

Query: 182 YLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYSYWLHG 225
            L  +   ++ +  + N++ ++ +G  + R  +G    S WL G
Sbjct: 136 PLTPDQIDKIDESWKRNEIGFDFKGAARTRWRIGPFR-SEWLKG 178


>IMGA|Medtr2g011410.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG_V3
           2930405-2929406 E EGN_Mt090430 20090702
          Length = 202

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 63/134 (47%)

Query: 84  GIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYA 143
           G+A LI +L ++P++  +   +A+++        +   +  F     NPN K+ + ++  
Sbjct: 36  GLAVLISWLVVRPKNLQYSVEDASIHNFNLTDANHLYANFDFTIRSKNPNSKVSLYYDSI 95

Query: 144 EIELYFYDRLIGIQALQPFTQRRRETRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYN 203
           E+ + + D+ +   A+QPF Q  +        + +  V L  +   +L+ +  S  +  +
Sbjct: 96  EVSVRYEDQTLATNAVQPFFQPHKNVTRMHARLTAQTVALYDSVPKDLKLERSSGDIALD 155

Query: 204 IRGTFKVRANLGLL 217
           +    ++R  +GLL
Sbjct: 156 VFIRARIRFKVGLL 169


>IMGA|Medtr5g094840.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3
           37582547-37581176 H EGN_Mt090430 20090702
          Length = 314

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 40  PNSESKRSRKQPVFIHHPRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSP 99
           P  E+ R  +Q     H R R    + WF  I+ ++ +L+    GIA  I YL  +P++P
Sbjct: 101 PPPENARRYEQYTRKKHRRNRHCCCLCWFIGIIFILIALL----GIAAGIFYLVFRPKAP 156

Query: 100 VFDTPNANLNTIYFDSPEYFNG-----DLTFLANFSNPNQKIDVRFEY-AEIELYFYDRL 153
            +   N  +  I   SP    G     D+T  A+  NPN KI + +E  +  E+++ D  
Sbjct: 157 NYTIENITIRGINITSPSSTTGISPEFDVTVKAD--NPNDKIGISYEKDSSAEIFYKDMR 214

Query: 154 IGIQALQPFTQ 164
           +    L  F Q
Sbjct: 215 LCNGILPSFYQ 225