Jatropha Genome Database

JcCA0316341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.10 + phase: 0 /partial
         (138 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233100_36.1 BolA-like protein; Fe-S metabolism associated...   169   4e-43
IMGA|Medtr4g141780.1 BolA-like protein chr04_pseudomolecule_IMGA...    51   2e-07

>IMGA|AC233100_36.1 BolA-like protein; Fe-S metabolism associated
           SufE AC233100.6 121683-123592 E EGN_Mt090430 20090702
          Length = 329

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 95/107 (88%), Gaps = 4/107 (3%)

Query: 33  SLSMGMNSEVDN----LGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGETH 88
           SL +   SEVD+    LG RGKRIK+ LE+EL+PIELEVED+SYQHAGHAGVRGSDGETH
Sbjct: 220 SLGVDFGSEVDDENVELGGRGKRIKKKLEKELQPIELEVEDVSYQHAGHAGVRGSDGETH 279

Query: 89  FNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEV 135
           FN++VVSKEF+GKSLVKRHRLIY LLQ+EL SGLHALSIVAKTP+EV
Sbjct: 280 FNVKVVSKEFQGKSLVKRHRLIYSLLQDELDSGLHALSIVAKTPSEV 326


>IMGA|Medtr4g141780.1 BolA-like protein
           chr04_pseudomolecule_IMGAG_V3 35101496-35099746 E
           EGN_Mt090430 20090702
          Length = 93

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 13/89 (14%)

Query: 45  LGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLV 104
           +G   ++++  L  +L P  LEV DIS    G  G       + F + +VS++FEGK L+
Sbjct: 1   MGVTKEQVESSLNSKLNPSHLEVTDIS----GGCG-------SSFAVEIVSEQFEGKRLL 49

Query: 105 KRHRLIYGLLQEELQSGLHALSI-VAKTP 132
           +RHR++   L+EE++  +HALS+  A TP
Sbjct: 50  ERHRMVNAALEEEMKE-IHALSVKKAVTP 77