Jatropha Genome Database

JcCA0316311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.30 - phase: 0 /pseudo/partial
         (730 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g013230.1 Rad21/Rec8 like protein, C-terminal; Rad21/...   110   2e-24
IMGA|Medtr7g090210.1 Rad21/Rec8 like protein, C-terminal; Rad21/...    52   8e-07

>IMGA|Medtr3g013230.1 Rad21/Rec8 like protein, C-terminal;
           Rad21/Rec8 like protein, N-terminal
           chr03_pseudomolecule_IMGAG_V3 2471651-2467695 E
           EGN_Mt090430 20090702
          Length = 662

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 161/344 (46%), Gaps = 57/344 (16%)

Query: 371 HFFDESTVLTNKRRKEIPS------------TALGIWKLNKNLRREQVLYEPSLTGYSAN 418
            F+D+  VL N+  K   +            T LG W+L     +E V  +P  TG    
Sbjct: 322 QFYDDPIVLPNRVMKRALNDTRNIRRRRRDVTTLGAWELKSKRFKEGVFDQPLFTGICNE 381

Query: 419 ICNLFKRDYIITKSHLTLEREATPEPRVVTSP---APSTEAIAEARDANSPAPAT---EV 472
           + N+ +R+YI +K HL +  E  P+   +T P     + E I +A +     P T   E+
Sbjct: 382 LLNIQRREYICSKPHLVISEEDHPDNTTITPPPINQVADEPIIDAPEIAVDEPTTDAPEI 441

Query: 473 VIEDRDVASPAXXXXXXXXXXVAQSPASEAEPDLEIERLRHHEGQDGNRLLPDSPARFIP 532
           V+++    +P                AS  E   +IE +R         +  D PA  IP
Sbjct: 442 VVDEPITDAPEIVN------------ASGVE---DIEHIRD--------VADDQPAT-IP 477

Query: 533 SPGRFVSSPFRRDDFTPNTQKNLGSGSVPWAQTSIETEVMPTPGVSASPGTCTTEPETPR 592
           +  +        +   P+  ++   G V    TS+ +E M  P  + SP    +E  T  
Sbjct: 478 TQSK------ETEQIIPSAYRSPVKGGV-ATPTSV-SEGMDIPYGATSPRAHASETGTSS 529

Query: 593 TFLEDQFDLGHTGLSDIPESI--AETEDLYFLEADNTPA--GSQGT-QSIDSLSVRSRAV 647
           T+ ++   L     SD  + I  A  +DL+FLE D+TPA   SQ T +SID+LS R+R +
Sbjct: 530 TYHDNI--LQSHDFSDTNQFINSAGKDDLWFLEEDSTPATASSQSTSRSIDTLSGRTRGL 587

Query: 648 AQYLKRHSLSTPLSGDQSRDLSLNKILQGKTRKLCARMFFETLV 691
           AQYLK +S  T +    + D SLNKIL GKTRK+ ARMFFE LV
Sbjct: 588 AQYLKDYSPCTTIPEQPAEDFSLNKILDGKTRKIAARMFFEVLV 631


>IMGA|Medtr7g090210.1 Rad21/Rec8 like protein, C-terminal; Rad21/Rec8
            like protein, N-terminal chr07_pseudomolecule_IMGAG_V3
            20069803-20056582 E EGN_Mt090430 20090702
          Length = 1487

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 629  AGSQGTQSIDS-LSVRSRAVAQYLKRHSLSTPLSGDQSRDLSLNKILQGKTRKLCARMFF 687
            +G++GT   +S  S R+RAVA+YL+       L G Q  +L L+ IL GKTRK  +RMFF
Sbjct: 1395 SGAEGTHLENSGWSSRTRAVAKYLQTLFDKEELHGRQ--NLHLDNILAGKTRKEASRMFF 1452

Query: 688  ETLV 691
            ETLV
Sbjct: 1453 ETLV 1456