Jatropha Genome Database

JcCA0316311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.10 - phase: 0 /pseudo
         (254 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g165780.1 ESF1 homolog, related chr04_pseudomolecule_...    76   2e-14
IMGA|Medtr4g098590.1 NUC153 chr04_pseudomolecule_IMGAG_V3 212858...    71   5e-13

>IMGA|Medtr4g165780.1 ESF1 homolog, related
           chr04_pseudomolecule_IMGAG_V3 41847556-41851787 E
           EGN_Mt090430 20090702
          Length = 737

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 40  RKVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKK-- 97
           ++VI DPRF  VH DPRF++    ++KV+IDSRF+RMFT K+F  S+AP+DKRGK K   
Sbjct: 47  KEVIEDPRFAMVHTDPRFREPPKHQTKVSIDSRFNRMFTHKSFLPSSAPVDKRGKPKDKA 106

Query: 98  NKTENALR 105
           N  E++LR
Sbjct: 107 NSQEHSLR 114


>IMGA|Medtr4g098590.1 NUC153 chr04_pseudomolecule_IMGAG_V3
          21285874-21290001 H EGN_Mt090430 20090702
          Length = 711

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 40 RKVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKN 98
          +K+I+DPRFV +H DPRF++    ++KVAIDSRF  MF D +F S +AP+DKRG+  +N
Sbjct: 24 KKLISDPRFVGMHTDPRFREARKDETKVAIDSRFKHMFNDNSFFSYSAPIDKRGRYIEN 82