Jatropha Genome Database

JcCA0316031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316031.10 - phase: 0 
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g138430.1 Bet v I allergen chr08_pseudomolecule_IMGAG...   114   2e-26
IMGA|Medtr8g138430.2 Bet v I allergen chr08_pseudomolecule_IMGAG...    52   1e-07
IMGA|Medtr8g138430.3 Bet v I allergen chr08_pseudomolecule_IMGAG...    48   2e-06

>IMGA|Medtr8g138430.1 Bet v I allergen chr08_pseudomolecule_IMGAG_V3
           33413042-33415126 E EGN_Mt090430 20090702
          Length = 160

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 100/163 (61%), Gaps = 7/163 (4%)

Query: 1   MGTVTYEGQIEGSTPPAKLFKMIVLEPQIYLPKVLPGAIKSFVNLQGDGGPGTLRQITFP 60
           MG  T+  +   +  P+++F  ++++ +  +PK+LP  +K    ++GDGG G++ Q+ F 
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  EGSPISHLKETVDAIDEENFIFEYSIIGGDPAIIDTSLVEKMSFQIKFEISPDGRTVCKR 120
           EGSP  +LK+ +D +D+EN I +Y++I GDP       +E +++++KFE + DG  +CK 
Sbjct: 61  EGSPFKYLKQKIDVLDKENLICKYTMIEGDPL---GDKLESIAYEVKFEATNDGGCLCKM 117

Query: 121 SCKAYTVDGVEVKEDEIRGSLEKTMQVFFGSFKLYEAYALANP 163
           +    T+   +VKE++++   E T+    G +++ E+Y L NP
Sbjct: 118 ASSYKTIGDFDVKEEDVKEGRESTI----GIYEVVESYLLENP 156


>IMGA|Medtr8g138430.2 Bet v I allergen
          chr08_pseudomolecule_IMGAG_V3 33413042-33415126 E
          EGN_Mt090430 20090702
          Length = 139

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 1  MGTVTYEGQIEGSTPPAKLFKMIVLEPQIYLPKVLPGAIKSFVNLQGDGGPGTLRQITFP 60
          MG  T+  +   +  P+++F  ++++ +  +PK+LP  +K    ++GDGG G++ Q+ F 
Sbjct: 1  MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61 EG 62
          EG
Sbjct: 61 EG 62


>IMGA|Medtr8g138430.3 Bet v I allergen
          chr08_pseudomolecule_IMGAG_V3 33413042-33415126 E
          EGN_Mt090430 20090702
          Length = 66

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (59%)

Query: 1  MGTVTYEGQIEGSTPPAKLFKMIVLEPQIYLPKVLPGAIKSFVNLQGDGGPGTLRQITFP 60
          MG  T+  +   +  P+++F  ++++ +  +PK+LP  +K    ++GDGG G++ Q+ F 
Sbjct: 1  MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61 EG 62
          E 
Sbjct: 61 EA 62