Jatropha Genome Database

JcCA0316001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316001.10 - phase: 0 
         (598 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...   367   e-102
IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...   366   e-101
IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...   365   e-101
IMGA|Medtr3g130620.1 Carotenoid oxygenase chr03_pseudomolecule_I...   109   3e-24
IMGA|Medtr7g040830.1 Carotenoid oxygenase chr07_pseudomolecule_I...    62   7e-10

>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/486 (39%), Positives = 291/486 (59%), Gaps = 13/486 (2%)

Query: 115 TADPRVQISGNYAPV-PEQPVRQSLPVAGTIPDCINGVYVRNGANPLFEPIAGHHLFDGD 173
           + DPR  +S N+APV  E P  Q   + GT+P  +NGVY+RNG NP F P   +HLFDGD
Sbjct: 95  SVDPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGD 154

Query: 174 GMVHAVSIKNGNASYACRFTETERLKQERELGRPVFPKAIGELHGHSGI-ARLLLFYARG 232
           GM+HAV I NG A+   R+ +T + K E E G  + P      +   G+ AR  +  AR 
Sbjct: 155 GMLHAVKITNGKATLCSRYVQTYKYKIENEAGYQILPNVFSGFNSLIGLAARGSVAVARV 214

Query: 233 LCGLVDHTKGTGVANAGLVYFNARLLAMSEDDVPYQVRITNSGDLETVGRHDFNGQLKNA 292
           L G  +   G G+ N  L  F  RL A+ E D+PY++++T +GD++T+GR+DFNG+L   
Sbjct: 215 LTGQYNPINGIGLINTSLALFGNRLFALGESDLPYEIKVTPNGDIQTIGRYDFNGKLFMN 274

Query: 293 MIAHPKIDPVSKELFALSYDVVQKPYLKYFKFSPDGKKSPDVNI-PLSVPTMMHDFAITE 351
           M AHPKID  + E FA  Y ++ +P+L YF+F  +G K  DV +  +  P+ +HDFAIT+
Sbjct: 275 MTAHPKIDSDTGECFAYRYGLI-RPFLTYFRFDSNGVKHNDVPVFSMKRPSFLHDFAITK 333

Query: 352 NFVVIPDQQVVFKLQEMIRGGSPVVYDKDKKSRFGILAKNATDADNIIWVESPETFCFHL 411
            + +  D Q+     +MI GGSPV  D  K  R GIL + A +   + W + P     HL
Sbjct: 334 KYALFADIQLEINPLDMIFGGSPVRSDPSKVPRIGILPRYADNESKMKWFDVPGLNIMHL 393

Query: 412 WNAWEEPESDEIVVIGSCMTPPDSIFNECDESLKSVLSEIRLNLKTGKSTRRPIIQESNQ 471
            NAW+E +   + ++   +   + +     E +  ++ ++R+N++TG  TR+P+    + 
Sbjct: 394 INAWDEEDGKTVTIVAPNILCVEHMMERL-ELIHEMIEKVRINVETGIVTRQPL----SA 448

Query: 472 VNLEAGMVNRNRLGRKSQYAYLAIAEPWPKVSGFAKVDLFTG-EVKKHIYGDKKYGGEPF 530
            NL+  ++N   LG+K ++ Y AI  P PK SG  K+D+  G EV   +YG+  YGGEPF
Sbjct: 449 RNLDLAVINNEFLGKKHRFIYAAIGNPMPKFSGVVKIDVLKGEEVGCRLYGEDCYGGEPF 508

Query: 531 FLPRDPNSENEDDGYILAFVHDEKKCKSELQIVNAINLQLE--ASIKLPSRVPYGFHGTY 588
           F+ R+ + E EDDGY++++VHDEKK +S   +++A + + E  A +KLP RVPYGFHG +
Sbjct: 509 FVARE-DGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLF 567

Query: 589 INSSDL 594
           +  SD+
Sbjct: 568 VKESDI 573


>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/487 (39%), Positives = 292/487 (59%), Gaps = 13/487 (2%)

Query: 115 TADPRVQISGNYAPV-PEQPVRQSLPVAGTIPDCINGVYVRNGANPLFEPIAGHHLFDGD 173
           + DPR  +S N+APV  E P  Q + + GT+P  + G Y+RNG NP F P   +HLFDGD
Sbjct: 94  SVDPRHVLSQNFAPVLDELPPTQCVIIKGTLPPSLYGAYIRNGPNPQFLPRGPYHLFDGD 153

Query: 174 GMVHAVSIKNGNASYACRFTETERLKQERELGRPVFPKAIGELHGHSGIA-RLLLFYARG 232
           GM+HA++I NG A+   R+ +T + K E + G  + P      +    +A R  +  AR 
Sbjct: 154 GMLHAITISNGKATLCSRYVKTYKYKIENKAGHQLIPNVFSGFNSLIALAARGSVVVARV 213

Query: 233 LCGLVDHTKGTGVANAGLVYFNARLLAMSEDDVPYQVRITNSGDLETVGRHDFNGQLKNA 292
           L G  + + G G+ N  L  F  RL A+ E D+PY+V++T +GD++T+GR+DFNG+L  +
Sbjct: 214 LTGQYNPSNGIGLVNTSLALFGNRLFALGESDLPYEVKLTPNGDIQTMGRYDFNGKLLMS 273

Query: 293 MIAHPKIDPVSKELFALSYDVVQKPYLKYFKFSPDGKKSPDVNI-PLSVPTMMHDFAITE 351
           M AHPKID  + E FA  Y  + +P+L YF+F  +G K  DV +  +  P+ +HDFAIT+
Sbjct: 274 MTAHPKIDSDTSECFAFRYGPI-RPFLTYFRFDSNGVKHNDVPVFSMKRPSFLHDFAITK 332

Query: 352 NFVVIPDQQVVFKLQEMIRGGSPVVYDKDKKSRFGILAKNATDADNIIWVESPETFCFHL 411
            + V  D Q+      MI GGSPV  D  K SR GIL + A D   + W + P     H 
Sbjct: 333 KYAVFADIQLEMNPLGMIFGGSPVRSDPSKVSRIGILPRYANDESKMKWFDVPGFNIMHT 392

Query: 412 WNAWEEPESDEIVVIGSCMTPPDSIFNECDESLKSVLSEIRLNLKTGKSTRRPIIQESNQ 471
            NAW+E +   + ++ + +     +    D  + +++ ++R+N++TG  TR+P+    + 
Sbjct: 393 INAWDEEDGGTVTLVATNILSVQHVMERMD-LIHAMIEKVRINVETGLVTRQPL----SA 447

Query: 472 VNLEAGMVNRNRLGRKSQYAYLAIAEPWPKVSGFAKVDLFTG-EVKKHIYGDKKYGGEPF 530
            NL+  ++N + LG+KS++ Y AI  P PK SG  K+D+  G EV   +YG+  YGGEPF
Sbjct: 448 RNLDLAVINNDFLGKKSRFVYAAIGNPMPKFSGVVKIDVLKGEEVGCRLYGEGCYGGEPF 507

Query: 531 FLPRDPNSENEDDGYILAFVHDEKKCKSELQIVNAINLQLE--ASIKLPSRVPYGFHGTY 588
           F+  +   E EDDGY++++VHDEKK +S+  +++A + + E  A +KLP RVPYGFHG +
Sbjct: 508 FVAME-GGEEEDDGYLVSYVHDEKKGESKFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLF 566

Query: 589 INSSDLV 595
           +  SD+ 
Sbjct: 567 VKQSDIT 573


>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/487 (39%), Positives = 297/487 (60%), Gaps = 12/487 (2%)

Query: 115 TADPRVQISGNYAPV-PEQPVRQSLPVAGTIPDCINGVYVRNGANPLFEPIAGHHLFDGD 173
           + DPR  +S N+APV  E P  Q   + GT+P  +NGVY+RNG NP F P   +HLFDGD
Sbjct: 96  SVDPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGD 155

Query: 174 GMVHAVSIKNGNASYACRFTETERLKQERELGRPVFPKAIGELHGH-SGIARLLLFYARG 232
           GM+HA++I NG A+   R+ +T + K E E G  + P      +   +  AR  +  AR 
Sbjct: 156 GMLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARV 215

Query: 233 LCGLVDHTKGTGVANAGLVYFNARLLAMSEDDVPYQVRITNSGDLETVGRHDFNGQLKNA 292
           + G  + + G G+AN  L  F  +L A+ E D+PY++ +T +GD++T+GR+DFNG+L  +
Sbjct: 216 ISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEINLTPNGDIQTIGRYDFNGKLSMS 275

Query: 293 MIAHPKIDPVSKELFALSYDVVQKPYLKYFKFSPDGKKSPDVNI-PLSVPTMMHDFAITE 351
           M AHPKID  + E FA  Y  +  P+L YF+F  +G K  DV +  ++ P+ +HDFAIT+
Sbjct: 276 MTAHPKIDGDTGETFAFRYGPM-PPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITK 334

Query: 352 NFVVIPDQQVVFKLQEMIRGGSPVVYDKDKKSRFGILAKNATDADNIIWVESPETFCFHL 411
            + V  D Q+     +MI GGSPV  D  K SR GIL + A+D   + W + P     H 
Sbjct: 335 KYAVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGILPRYASDESKMKWFDVPGFNIMHA 394

Query: 412 WNAWEEPESDEIVVIGSCMTPPDSIFNECDESLKSVLSEIRLNLKTGKSTRRPIIQESNQ 471
            N+W+  + +E V + +          E  E + +++ ++++N+KTG  +R+P+    + 
Sbjct: 395 INSWDGEDDEETVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPL----SA 450

Query: 472 VNLEAGMVNRNRLGRKSQYAYLAIAEPWPKVSGFAKVDLFTG-EVKKHIYGDKKYGGEPF 530
            NL+  ++N + +G+K+++ Y AI  P PK+SG  K+D+  G EV   +YG+  YGGEPF
Sbjct: 451 RNLDFAVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEGCYGGEPF 510

Query: 531 FLPRDPNSENEDDGYILAFVHDEKKCKSELQIVNAINLQLE--ASIKLPSRVPYGFHGTY 588
           F+ R+ + E EDDGY++++VHDEKK +S+  +++A + + E  A +KLP RVPYGFHG +
Sbjct: 511 FVARE-DGEEEDDGYLVSYVHDEKKGESKFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLF 569

Query: 589 INSSDLV 595
           +  SD+ 
Sbjct: 570 VKESDIT 576


>IMGA|Medtr3g130620.1 Carotenoid oxygenase
           chr03_pseudomolecule_IMGAG_V3 33198267-33194913 E
           EGN_Mt090430 20090702
          Length = 565

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 127/524 (24%), Positives = 220/524 (41%), Gaps = 54/524 (10%)

Query: 103 LVSKERQHQLPKTADPRVQISGN------YAPVPEQPVRQSLPVAGTIPDCINGVYVRNG 156
           +VS  R    P   + R + +G+      +  +P++     L V G IP  + G Y+RNG
Sbjct: 56  VVSPSRVIAPPPPPEKRSETTGDHQHHVAWTSIPQERWEGELLVQGHIPLWLKGTYIRNG 115

Query: 157 ANPLFEPIAGH---HLFDGDGMVHAVSIKNGNASYACRFTETERLKQERELGRPVFPKAI 213
             P    I  +   HLFDG   +  +  ++G      R  E++  +  ++  +  + +  
Sbjct: 116 --PGMWNIGDYNFRHLFDGYATLVGLHFEDGRLVAGHRQVESQAYQAAKKNQKICY-REF 172

Query: 214 GELHGHSGIARLLLFYARGLCGLVDHTKGTGVANAGLVYF-NARLLAMSEDDVPYQVRIT 272
            E+      A   L Y   L  L   +  T  AN G+V   + R++ ++E      V   
Sbjct: 173 SEVPK----AENFLAYVGELANLFSGSSLTDNANTGVVKLGDGRVVCLTETQKGSIV--I 226

Query: 273 NSGDLETVGRHDFNGQLKNAM-IAHPKIDPVSKELFALSYDVVQKPYLKYFKFSPDGKKS 331
           +   LET+G+ D++  L   +  AHP +     E   L  D+V+  YL   +  P   + 
Sbjct: 227 DPDTLETIGKFDYSDSLGGLIHSAHPIV--TDNEFLTLIPDLVKPGYL-VARMEPGSNER 283

Query: 332 PDVNI----PLSVPTMMHDFAITENFVVIPDQQVVFKLQEMIRGGSPVVYD----KDKKS 383
             +        + P  +H F +TE++V++P+  + +  Q ++R     +Y      + K+
Sbjct: 284 KVIGRVDCRGGTSPGWVHSFPVTEHYVIVPEMPLRYCAQNLLRAEPTPLYKFQWHPESKA 343

Query: 384 RFGILAKNATDADNIIWVESPETFCFHLWNAWEEPESDEIV--VIGSCMTPPDSI----- 436
              ++ K  T    +  VE P    FH  NA+EE + D  V  VI  C     +      
Sbjct: 344 FMHVMCK--TSGKIVASVEVPLFVTFHFINAYEEEDEDGRVTAVIADCCEHNSNTDILDK 401

Query: 437 --------FNECDESLKSVLSEIRLNLKTGKSTRRPIIQESNQ--VNLEAGMVNRNRLGR 486
                   FN  D    + +   R+ L            + N+    ++   +N N LG 
Sbjct: 402 LRLQNLRSFNGEDVLPDARVGRFRIPLDGSPYGTLDAALDPNEHGKGMDMCSINPNYLGL 461

Query: 487 KSQYAYLAIAE-PWPKVSGFAKVDLFTGEVKKHIYGDKKYGGEPFFLPRDPNSENEDDGY 545
           K +YAY   A+ P    +   K+DL   E  K+ Y +     EPFF+PR P +  EDDG 
Sbjct: 462 KYRYAYACGAQRPCNFPNTLTKIDL-QSERAKNWYEEGAVPSEPFFVPR-PGATKEDDGV 519

Query: 546 ILAFVHDEKKCKSELQIVNAINLQLEASIKLPSRVPYGFHGTYI 589
           +++ +  EK  +    +++    +  A  K P  +PYG HG ++
Sbjct: 520 VISII-SEKNGEGYALVLDGSTFEEIARAKFPYGLPYGLHGCWV 562


>IMGA|Medtr7g040830.1 Carotenoid oxygenase
           chr07_pseudomolecule_IMGAG_V3 10149889-10155418 E
           EGN_Mt090430 20090702
          Length = 621

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 122/549 (22%), Positives = 216/549 (39%), Gaps = 112/549 (20%)

Query: 132 QPVRQSLPVAGTIP-DCINGVYVRNGANPLFEPIAGH--HLFDGDGMVHAVSIKNGN--A 186
           QP++  + + G IP D  +G Y   G   +F+   G   H  DG G + A +  N     
Sbjct: 86  QPIKLHV-LEGAIPTDFPSGAYYLTGPG-IFKDDHGSTVHPLDGHGYLRAFTFDNATNEV 143

Query: 187 SYACRFTETERLKQE--RELGRPVFPKAIGELHGHSGIARLLLFYARGLCGLVDHTKGTG 244
            Y  ++ +TE   +E  R+ G   F         H G   +L    +G   + +      
Sbjct: 144 KYMAKYIKTEAQVEEYDRKTGSWRF--------THRGPFSVL----KGGKKIGNTKVMKN 191

Query: 245 VANAGLVYFNARLLAMSEDDVPYQVRITNSGDLETVGR-----------HDFN------- 286
           VAN  ++ +  +LL M E   PY++    SG L+T+G+           H+ N       
Sbjct: 192 VANTSVLMWGKKLLCMWEGGNPYEIE---SGTLDTIGKFNMVDGCDMDDHNVNHGGDVWE 248

Query: 287 -----------GQLK---NAMIAHPKIDPVSKELFALSYD----VVQKPYLKYFKFSPDG 328
                      G  K     +++H K+D     L  +S +    ++ +    + ++  + 
Sbjct: 249 VAATLLKPILYGIFKMPPKRLLSHYKVDSSRSRLLTVSCNAEDMLLPRSSFTFTEYDNNF 308

Query: 329 KKSPDVNIPLSVPTMMHDFAITE-NFVVIPDQQVVFKLQEM--IRGGSPV-----VYDKD 380
           K        +    M+HD+A T+ +++V  ++  +  L  M  + G SP+     V    
Sbjct: 309 KLVEKQEFKIPDHLMIHDWAFTDTHYIVFANRIKLDVLGSMGAVCGASPMISALTVNPSK 368

Query: 381 KKSRFGILAK--NATDADNIIW---VESP-ETFCFHLWNAWEEPESD---EIVVIGSCMT 431
             S   +L +  N  ++    W   +E P + +  H+ NA+E  ++    EI +  S  +
Sbjct: 369 STSPIYLLPRFPNKPESKKRDWRKPLEVPSQLWLLHVGNAFEVKQAHGNLEIQIQASACS 428

Query: 432 PP------------------DSIFNECDESLKSVLSEIRLNLKTGKSTRRPIIQESNQVN 473
                                SI N   E+    L ++ + L +  + +   ++  N+  
Sbjct: 429 YQWFNFRKLFGYNWQTQKLDPSIMNVKGENALPHLVQVSIKLDSDYNCQECDVKPINKWK 488

Query: 474 LEAGM--VNRNRLGRKSQYAYLAIAE------PWPKVSGFAKVDLFTGEVKKHIYGDKKY 525
             A     N +  G++++Y Y A         P        K DL    VK    G +K+
Sbjct: 489 KSADFPATNPSFSGKQNKYLYAATTLGSRKTLPSFPFDTIVKFDLVNNSVKAWTAGSRKF 548

Query: 526 GGEPFFLPRDPNSENEDDGYILAFVHDEKKCKSELQIVNAINL----QLEASIKLPSRV- 580
            GEP F+P+    E EDDGY+L   +     +  L I+N   +     L A I++P  + 
Sbjct: 549 VGEPIFVPK---GEEEDDGYLLVVEYATSMQRCCLVILNPKEIGTKKALVARIEIPMHLN 605

Query: 581 -PYGFHGTY 588
            P GFHG +
Sbjct: 606 FPLGFHGLW 614