Jatropha Genome Database

JcCA0315891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315891.10 - phase: 0 /partial
         (145 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g146110.1 Pentatricopeptide repeat chr07_pseudomolecu...    97   2e-21
IMGA|Medtr4g080760.1 Pentatricopeptide repeat chr04_pseudomolecu...    56   5e-09

>IMGA|Medtr7g146110.1 Pentatricopeptide repeat
           chr07_pseudomolecule_IMGAG_V3 34881987-34880588 E
           EGN_Mt090430 20090702
          Length = 451

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 68  IGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFS 121
           IGSP RVQKLIASQSD LLAKEIFDYAS QPNFRH+YS+YL+LILK GRSK+FS
Sbjct: 39  IGSPTRVQKLIASQSDPLLAKEIFDYASLQPNFRHNYSTYLILILKFGRSKHFS 92


>IMGA|Medtr4g080760.1 Pentatricopeptide repeat
           chr04_pseudomolecule_IMGAG_V3 16642096-16640574 H
           EGN_Mt090430 20090702
          Length = 418

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 47/76 (61%)

Query: 70  SPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
           +P  ++ +IA+Q D L+  E+F +AS QP FRH+ SS+ V I KLG +K +  +D+++  
Sbjct: 96  TPEELRNVIANQRDPLVCLELFHWASHQPRFRHNESSFHVTIKKLGDAKMYQEMDDVVNQ 155

Query: 130 LKSKHYVVKSNVFSYI 145
           L +   +    +F+ I
Sbjct: 156 LLAVRSIGNEALFNMI 171