Jatropha Genome Database

JcCA0315721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.30 - phase: 0 /partial
         (323 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g140830.1 Isopentenyl transferase-like chr01_pseudomo...   243   1e-64
IMGA|Medtr4g073150.1 Isopentenyl transferase-like chr04_pseudomo...   129   2e-30

>IMGA|Medtr1g140830.1 Isopentenyl transferase-like
           chr01_pseudomolecule_IMGAG_V3 31270374-31266913 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/309 (46%), Positives = 195/309 (63%), Gaps = 38/309 (12%)

Query: 26  KMDIVTPRWQ-KSKVVILMGATGTGKSRLSLDLAMQFP-AEIINSDKMQVYKGLEVTTNK 83
           +M+I   R + K KV+I++GATG+GKSRLS++LA  FP +EIINSDK+QVY+GL++TTNK
Sbjct: 52  RMEISPSRHRRKDKVLIIVGATGSGKSRLSVELATLFPYSEIINSDKIQVYRGLDITTNK 111

Query: 84  ITEEESSGVPHHLLGVVNP-NADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYIEAL 142
           I   + + VPHHLLG ++P + +F+  DF   A   I  I+ R  LPIIVGGSNS+I AL
Sbjct: 112 IPFHQRNNVPHHLLGDIDPSHGEFSPSDFRRHAGDIISDITSRRKLPIIVGGSNSFIHAL 171

Query: 143 V---DDPEFKFRS-------------RYDCCFLWVDVSMLVLKEFLYKRVDEMVNKGMVD 186
           +    DPE                  RY CCFLW+D+S  VL E+L KRVD+M + GMV+
Sbjct: 172 LVERFDPESNVFDESSSLSTSISSDLRYKCCFLWMDISFPVLSEYLLKRVDDMFDSGMVN 231

Query: 187 EVRNIFDPNADYSRGIRKSIGVPELDKHFRS---ELFLDEEESARVLQ-----EAIREIK 238
           E+   ++P+AD   G+RK+IGVPE D+ F+    ++  DE E    ++     EA++ IK
Sbjct: 232 ELAEFYEPDADNQTGLRKAIGVPEFDRFFKQYPPQVGPDESERHNPMREGAYIEAVKAIK 291

Query: 239 SNNYKLALRQVEKIRRLKNVKGWNIHRIDATEFFR-------NKDDDE---MWKTLVGRP 288
            N  +LA RQ+ KI RLK   GW++ RIDATE FR       N   +E   +WK  V  P
Sbjct: 292 DNTCQLAKRQIGKILRLKRA-GWDLQRIDATEAFRAVLTSESNGGGEEFTGVWKKQVLEP 350

Query: 289 SIAIVRRFL 297
           S+ IV+RFL
Sbjct: 351 SVKIVKRFL 359


>IMGA|Medtr4g073150.1 Isopentenyl transferase-like
           chr04_pseudomolecule_IMGAG_V3 14380288-14384948 E
           EGN_Mt090430 20090702
          Length = 481

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query: 35  QKSKVVILMGATGTGKSRLSLDLAMQFPAEIINSDKMQVYKGLEVTTNKITEEESSGVPH 94
           ++ KVV++ G TG+GKS+L++DLA  FP E+IN+D MQVY+GL++ TNK+   E +GV H
Sbjct: 15  KQPKVVVITGPTGSGKSKLAVDLASHFPIEVINADSMQVYRGLDILTNKLPFSEQNGVVH 74

Query: 95  HLLGVVNPNADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYIEALV 143
           HLLG VNPN +FTAK F + A   I+ I  R  LP+IVGG+N YI+ALV
Sbjct: 75  HLLGCVNPNLEFTAKTFRDSAIPIIDEILSRNHLPVIVGGTNYYIQALV 123



 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 34/178 (19%)

Query: 153 RYDCCFLWVDVSMLVLKEFLYKRVDEMVNKGMVDEVRNIFDPNADYSRGIRKSIGVPELD 212
           RY CCF+ VD S+ +L  ++ +RVD+M++ G+++EV +I+  NADY+RG+R++IGV E +
Sbjct: 219 RYACCFISVDASLPILDRYVEQRVDDMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFE 278

Query: 213 KHFRSELF---------------------------------LDEEESARVLQEAIREIKS 239
              R+ +F                                   + +S  +L++AI ++K 
Sbjct: 279 DLLRTSVFKNINQREGELIDGSSLENSEPLFDGNLMAWLRSFSDTKSTTLLEDAIEKVKV 338

Query: 240 NNYKLALRQVEKIRRLKNVKGWNIHRIDATEFFRNKDDDEMWKTLVGRPSIAIVRRFL 297
           N  +L  RQ   + RL+ + GW+IH +D+TE   +K +D +W   V   +  IV  F+
Sbjct: 339 NTRRLVRRQKRMLSRLETLFGWDIHYVDSTESILSKSND-IWNRQVVESATKIVTTFV 395